Evidence map›Paper›PMID 22577010›Full record

ReviewProteomics2012

Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics.

Tujin Shi, Dian Su, Tao Liu, Keqi Tang, David G Camp, Wei-Jun Qian, Richard D Smith

Abstract readReview
In one paragraph

Review in Proteomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed.

  1. Article
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  4. Review
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  17. Review
  18. Article
  19. An Introduction to Advanced Targeted Acquisition Methods.Molecular & cellular proteomics : MCP · 2021
    Review
  20. Review

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tujin ShiBiological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Dian Su
Tao Liu
Keqi Tang
David G Camp
Wei-Jun Qian
Richard D Smith

Funding

WORKSHOP AND TRAINING ACTIVITIESP41RR018522 · NCRR · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI BELOV, MIKHAIL · 2003 to 2011
$25.1M
Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
PNNL Clinical Proteome Characterization CenterU24CA160019 · NCI · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI RODLAND, KARIN D, SMITH, RICHARD D · 2011 to 2016
$15.7M
The Early Detection Research Network: Biomarker Developmental LaboratoriesU01CA111244 · NCI · UNIVERSITY OF WASHINGTON · PI LIU, ALVIN Y · 2004 to 2015
$4.1M
Urinary Proteome Monitoring for Transplant InjuryR01DK083447 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CAMP, DAVID G, SARWAL, MINNIE M · 2010 to 2013
$2.4M
A Universal Multiplex Assay System for High-Throughput Clinical ApplicationsDP2OD006668 · OD · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI QIAN, WEI-JUN · 2009 to 2009
$2.1M
Transplant injury biology and monitoring by urine proteomicsR56DK083447 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SARWAL, MINNIE M · 2015 to 2015
$100k
NCI NIH HHS CA111244NCI NIH HHS U01 CA111244NCI NIH HHS U24 CA160019NCI NIH HHS U24-CA-160019-01NCRR NIH HHS 5P41RR018522-10NCRR NIH HHS P41 RR018522NIDDK NIH HHS DK083447NIDDK NIH HHS R01 DK083447NIDDK NIH HHS R56 DK083447NIGMS NIH HHS 8P41GM103493-10NIGMS NIH HHS P41 GM103493NIH HHS 1-DP2OD006668-01NIH HHS DP2 OD006668
6 · The paper itself

Abstract

Selected reaction monitoring (SRM) - also known as multiple reaction monitoring (MRM) - has emerged as a promising high-throughput targeted protein quantification technology for candidate biomarker verification and systems biology applications. A major bottleneck for current SRM technology, however, is insufficient sensitivity for, e.g. detecting low-abundance biomarkers likely present at the low ng/mL to pg/mL range in human blood plasma or serum, or extremely low-abundance signaling proteins in cells or tissues. Herein, we review recent advances in methods and technologies, including front-end immunoaffinity depletion, fractionation, selective enrichment of target proteins/peptides including posttranslational modifications, as well as advances in MS instrumentation which have significantly enhanced the overall sensitivity of SRM assays and enabled the detection of low-abundance proteins at low- to sub-ng/mL level in human blood plasma or serum. General perspectives on the potential of achieving sufficient sensitivity for detection of pg/mL level proteins in plasma are also discussed.

Indexed as

BiomarkersBlood ProteinsChemical FractionationHigh-Throughput Screening AssaysHumansMass SpectrometryProteomicsReproducibility of ResultsSensitivity and SpecificityBiomarkersBlood Proteins

Identifiers

PMID22577010
PMCPMC3375056

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.