Evidence map›Paper›PMID 22576849›Full record

ArticlePlant physiology2012

Chloroplast RH3 DEAD box RNA helicases in maize and Arabidopsis function in splicing of specific group II introns and affect chloroplast ribosome biogenesis.

Yukari Asakura, Erin Galarneau, Kenneth P Watkins, Alice Barkan, Klaas J van Wijk

Abstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

64 citing papers in PubMed.

  1. Review
  2. Article
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  4. Novel resources to investigate leaf plasmodesmata formation in CThe Plant journal : for cell and molecular biology · 2024
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  7. Article
  8. Plant organellar RNA maturation.The Plant cell · 2023
    Review
  9. Functions and mechanisms of RNA helicases in plants.Journal of experimental botany · 2023
    Review
  10. Article
  11. NNature communications · 2022
    Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Functions of PPR Proteins in Plant Growth and Development.International journal of molecular sciences · 2021
    Review
  18. Article
  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yukari AsakuraDepartment of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
Erin Galarneau
Kenneth P Watkins
Alice Barkan
Klaas J van Wijk

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chloroplasts in angiosperms contain at least seven nucleus-encoded members of the DEAD box RNA helicase family. Phylogenetic analysis shows that five of these plastid members (RH22, -39, -47, -50, and -58) form a single clade and that RH3 forms a clade with two mitochondrial RH proteins (PMH1 and -2) functioning in intron splicing. The function of chloroplast RH3 in maize (Zea mays; ZmRH3) and Arabidopsis (Arabidopsis thaliana; AtRH3) was determined. ZmRH3 and AtRH3 are both under strong developmental control, and ZmRH3 abundance sharply peaked in the sink-source transition zone of developing maize leaves, coincident with the plastid biogenesis machinery. ZmRH3 coimmunoprecipitated with a specific set of plastid RNAs, including several group II introns, as well as pre23S and 23S ribosomal RNA (rRNA), but not 16S rRNA. Furthermore, ZmRH3 associated with 50S preribosome particles as well as nucleoids. AtRH3 null mutants are embryo lethal, whereas a weak allele (rh3-4) results in pale-green seedlings with defects in splicing of several group II introns and rRNA maturation as well as reduced levels of assembled ribosomes. These results provide strong evidence that RH3 functions in the splicing of group II introns and possibly also contributes to the assembly of the 50S ribosomal particle. Previously, we observed 5- to 10-fold up-regulation of AtRH3 in plastid Caseinolytic protease mutants. The results shown here indicate that AtRH3 up-regulation was not a direct consequence of reduced proteolysis but constituted a compensatory response at both RH3 transcript and protein levels to impaired chloroplast biogenesis; this response demonstrates that cross talk between the chloroplast and the nucleus is used to regulate RH3 levels.

Indexed as

Amino Acid SequenceArabidopsisChloroplastsDEAD-box RNA HelicasesDNA, BacterialEndopeptidase ClpGene Expression Regulation, PlantImmunoprecipitationIntronsMolecular Sequence DataMutagenesis, InsertionalMutationOrgan SpecificityPhotosynthesisPhylogenyPlant ProteinsDEAD-box RNA HelicasesDNA, BacterialEndopeptidase ClpPlant ProteinsRNA, PlantT-DNA

Identifiers

PMID22576849
PMCPMC3387720

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.