Evidence map›Paper›PMID 22570476›Full record

ArticleThe Journal of biological chemistry2012

Okazaki fragment processing-independent role for human Dna2 enzyme during DNA replication.

Julien P Duxin, Hayley R Moore, Julia Sidorova, Kenneth Karanja, Yuchi Honaker, Benjamin Dao, Helen Piwnica-Worms, Judith L Campbell, Raymond J Monnat, Sheila A Stewart

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 61 citations in OpenAlex.

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  12. International journal of molecular sciences · 2021
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  16. CtIP promotes the motor activity of DNA2 to accelerate long-range DNA end resection.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Julien P DuxinDepartment of Cell Biology and Physiology, University of Washington, Seattle, Washington 98195, USA.
Hayley R Moore
Julia Sidorova
Kenneth Karanja
Yuchi Honaker
Benjamin Dao
Helen Piwnica-Worms
Judith L Campbell
Raymond J Monnat
Sheila A Stewart
University of Missouri–St. Louis · USCalifornia Institute of Technology · USUniversity of Washington · US

Funding

Tumor mutation signaturesP01CA077852 · NCI · UNIVERSITY OF WASHINGTON · PI MONNAT, RAYMOND J · 1999 to 2019
$26.0M
MOLECULAR ONCOLOGY TRAINING GRANTT32CA113275 · NCI · WASHINGTON UNIVERSITY · PI Matthew J Walter · 2006 to 2026
$5.7M
Enzyme Interactions at the DNA Replication ForkR01GM078666 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CAMPBELL, JUDITH L · 2006 to 2009
$1.5M
HDNA2 IN DNA REPLICATION AND TELOMERE STABILITYR01GM095924 · NIGMS · WASHINGTON UNIVERSITY · PI STEWART, SHEILA A · 2011 to 2014
$1.1M
NCI NIH HHS P01 CA077852NCI NIH HHS P01 CA77852NCI NIH HHS T32 CA113275NIGMS NIH HHS GM04701NIGMS NIH HHS GM04707NIGMS NIH HHS GM078666NIGMS NIH HHS GM95924NIGMS NIH HHS R01 GM078666NIGMS NIH HHS R01 GM095924
6 · The paper itself

Abstract

Dna2 is an essential helicase/nuclease that is postulated to cleave long DNA flaps that escape FEN1 activity during Okazaki fragment (OF) maturation in yeast. We previously demonstrated that the human Dna2 orthologue (hDna2) localizes to the nucleus and contributes to genomic stability. Here we investigated the role hDna2 plays in DNA replication. We show that Dna2 associates with the replisome protein And-1 in a cell cycle-dependent manner. Depletion of hDna2 resulted in S/G(2) phase-specific DNA damage as evidenced by increased γ-H2AX, replication protein A foci, and Chk1 kinase phosphorylation, a readout for activation of the ATR-mediated S phase checkpoint. In addition, we observed reduced origin firing in hDna2-depleted cells consistent with Chk1 activation. We next examined the impact of hDna2 on OF maturation and replication fork progression in human cells. As expected, FEN1 depletion led to a significant reduction in OF maturation. Strikingly, the reduction in OF maturation had no impact on replication fork progression, indicating that fork movement is not tightly coupled to lagging strand maturation. Analysis of hDna2-depleted cells failed to reveal a defect in OF maturation or replication fork progression. Prior work in yeast demonstrated that ectopic expression of FEN1 rescues Dna2 defects. In contrast, we found that FEN1 expression in hDna2-depleted cells failed to rescue genomic instability. These findings suggest that the genomic instability observed in hDna2-depleted cells does not arise from defective OF maturation and that hDna2 plays a role in DNA replication that is distinct from FEN1 and OF maturation.

Indexed as

DNADNA ReplicationCell CycleCell Line, TumorCell NucleusChromatinDNA DamageDNA HelicasesDNA RepairGene Expression RegulationHeLa CellsHumansKineticsMicronucleus TestsMicroscopy, FluorescenceChromatinDNADNA2 protein, humanDNA HelicasesOkazaki fragments

Identifiers

PMID22570476
PMCPMC3381158
OpenAlexW1984518551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.