Evidence map›Paper›PMID 22570148›Full record

ArticleMolecules and cells2012

Bacterial transposons are co-transferred with T-DNA to rice chromosomes during Agrobacterium-mediated transformation.

Sung-Ryul Kim, Gynheung An

Abstract read
In one paragraph

Article in Molecules and cells, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Editing theInternational journal of molecular sciences · 2025
    Article
  2. Article
  3. Article
  4. Efficient CRISPR-mediated base editing inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Review
  6. Review
  7. An Insight into T-DNA Integration Events in Medicago sativa.International journal of molecular sciences · 2017
    Article
  8. Article
  9. Article
  10. A whole-genome analysis of a transgenic rice seed-based edible vaccine against cedar pollen allergy.DNA research : an international journal for rapid publication of reports on genes and genomes · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Sung-Ryul KimCrop Biotech Institute and Department of Plant Molecular Systems Biotech, Kyung Hee University, Yongin 446-701, Korea.
Gynheung An

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agrobacterium tumefaciens is widely utilized for delivering a foreign gene into a plant's genome. We found the bacterial transposon Tn5393 in transgenic rice plants. Analysis of the flanking sequences of the transferred-DNA (T-DNA) identified that a portion of the Tn5393 sequence was present immediately next to the end of the T-DNA. Because this transposon was present in A. tumefaciens strain LBA4404, but not in EHA105 and GV3101, our findings indicated that Tn5393 was transferred from LBA4404 into the rice genome during the transformation process. We also noted that another bacterial transposon, Tn5563, is present in transgenic plants. Analyses of 331 transgenic lines revealed that 26.0% carried Tn5393 and 2.1% contained Tn5563. In most of the lines, an intact transposon was integrated into the T-DNA and transferred to the rice chromosome. More than one copy of T-DNA was introduced into the plants, often at a single locus. This resulted in T-DNA repeats of normal and transposon-carrying TDNA that generated deletions of a portion of the T-DNA, joining the T-DNA end to the bacterial transposon. Based on these data, we suggest that one should carefully select the appropriate Agrobacterium strain to avoid undesirable transformation of such sequences.

Indexed as

Agrobacterium tumefaciensBase SequenceChromosomes, PlantDNA, BacterialDNA Transposable ElementsMolecular Sequence DataMutagenesis, InsertionalOryzaPlants, Genetically ModifiedSequence Analysis, DNASequence DeletionTransformation, GeneticDNA, BacterialDNA Transposable ElementsT-DNA

Identifiers

PMID22570148
PMCPMC3887757

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.