Evidence map›Paper›PMID 22569840›Full record

ArticleCell biochemistry and biophysics2012

An all-atom model of the structure of human copper transporter 1.

Igor F Tsigelny, Yuriy Sharikov, Jerry P Greenberg, Mark A Miller, Valentina L Kouznetsova, Christopher A Larson, Stephen B Howell

Abstract read
In one paragraph

Article in Cell biochemistry and biophysics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
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  7. Review
  8. Article
  9. Article
  10. Review
  11. Pilot Study ofMolecules (Basel, Switzerland) · 2018
    Article
  12. Pilot Study ofScientific reports · 2017
    Article
  13. Copper trafficking to the secretory pathway.Metallomics : integrated biometal science · 2016
    Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Lysosome-related organelles as mediators of metal homeostasis.The Journal of biological chemistry · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Igor F TsigelnyDepartment of Neurosciences, University of California, San Diego, 9500 Gilman Drive, La Jolla, San Diego, CA 92093-0505. USA, itsigeln@ucsd.edu
Yuriy Sharikov
Jerry P Greenberg
Mark A Miller
Valentina L Kouznetsova
Christopher A Larson
Stephen B Howell
University of California, San Diego · USSan Diego Supercomputer Center · US

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
U of Calif, San Diego Neuroscience Microscopy ImagingP30NS047101 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G, ZHENG, BINHAI · 2003 to 2022
$9.0M
Cisplatin Resistance mediated by copper export pathwaysR01CA095298 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HOWELL, STEPHEN B · 2002 to 2014
$3.1M
Control of the cellular pharmacology of the platinum-containing drugs by CTR1R01CA152185 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HOWELL, STEPHEN B · 2010 to 2014
$1.5M
NCI NIH HHS CA095298NCI NIH HHS CA152185NCI NIH HHS P30 CA023100NCI NIH HHS P30 CA23100NCI NIH HHS R01 CA095298NCI NIH HHS R01 CA152185NINDS NIH HHS P30 NS047101
6 · The paper itself

Abstract

Human copper transporter 1 (hCTR1) is the major high affinity copper influx transporter in mammalian cells that also mediates uptake of the cancer chemotherapeutic agent cisplatin. A low resolution structure of hCTR1 determined by cryoelectron microscopy was recently published. Several protein structure simulation techniques were used to create an all-atom model of this important transporter using the low resolution structure as a starting point. The all-atom model provides new insights into the roles of specific residues of the N-terminal extracellular domain, the intracellular loop, and C-terminal region in metal ion transport. In particular, the model demonstrates that the central region of the pore contains four sets of methionine triads in the intramembranous region. The structure confirms that two triads of methionine residues delineate the intramembranous region of the transporter, and further identifies two additional methionine triads that are located in the extracellular N-terminal part of the transporter. Together, the four triads create a structure that promotes stepwise transport of metal ions into and then through the intramembranous channel of the transporter via transient thioether bonds to methionine residues. Putative copper-binding sites in the hCTR1 trimer were identified by a program developed by us for prediction of metal-binding sites. These sites correspond well with the known effects of mutations on the ability of the protein to transport copper and cisplatin.

Indexed as

Molecular Dynamics SimulationAmino Acid SequenceBinding SitesCation Transport ProteinsCisplatinCopperCopper Transporter 1Crystallography, X-RayHumansMolecular Sequence DataProtein Structure, TertiarySequence AlignmentCation Transport ProteinsCisplatinCopperCopper Transporter 1

Identifiers

PMID22569840
PMCPMC3590913
OpenAlexW2093099192

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.