Evidence map›Paper›PMID 22568401›Full record

ArticleBrain pathology (Zurich, Switzerland)2012

Frequent BRAF gain in low-grade diffuse gliomas with 1p/19q loss.

Young-Ho Kim, Naosuke Nonoguchi, Werner Paulus, Benjamin Brokinkel, Kathy Keyvani, Ulrich Sure, Karsten Wrede, Luigi Mariani, Felice Giangaspero, Yuko Tanaka and 5 more

Open access · greenAbstract read
In one paragraph

Article in Brain pathology (Zurich, Switzerland), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
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  6. Frontiers in oncology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 10 institutions in 7 countries.

Young-Ho KimInternational Agency for Research on Cancer, Lyon, France.
Naosuke Nonoguchi
Werner Paulus
Benjamin Brokinkel
Kathy Keyvani
Ulrich Sure
Karsten Wrede
Luigi Mariani
Felice Giangaspero
Yuko Tanaka
Yoichi Nakazato
Anne Vital
Michel Mittelbronn
Arie Perry
Hiroko Ohgaki
Centre International de Recherche sur le Cancer · FREssen University Hospital · DEGunma University · JPGoethe University Frankfurt · DEInstitute of Neuroimmunology of the Slovak Academy of Sciences · SKInstitut Interdisciplinaire de Neuroscience · FRSapienza University of Rome · ITUniversity Hospital Münster · DEUniversity Hospital of Basel · CHUniversity of California, San Francisco · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromosomal 7q34 duplication and BRAF-KIAA1549 fusion is a characteristic genetic alteration in pilocytic astrocytomas. 7q34 gain appears to be common in diffuse astrocytomas, but its significance is unclear. We assessed BRAF gain and BRAF mutations in 123 low-grade diffuse gliomas, including 55 diffuse astrocytomas, 18 oligoastrocytomas and 50 oligodendrogliomas. Quantitative polymerase chain reaction (PCR) revealed BRAF gain in 17/50 (34%) oligodendrogliomas, a significantly higher frequency than in diffuse astrocytomas (7/55; 13%; P = 0.0112). BRAF gain was common in low-grade diffuse gliomas with 1p/19q loss (39%) and those lacking any of the genetic alterations analyzed (31%), but was rare in those with TP53 mutations (2%). Logistic regression analysis showed a significant positive association between 1p/19q loss and BRAF gain (P = 0.0032) and a significant negative association between TP53 mutations and BRAF gain (P = 0.0042). Fluorescence in situ hybridization (FISH) analysis of 26 low-grade diffuse gliomas with BRAF gain additionally revealed BRAF-KIAA1549 fusion in one oligodendroglioma. Sequencing of cDNA in 17 low-grade diffuse gliomas showed BRAF-KIAA1549 fusion in another oligodendroglioma. A BRAF(V600E) mutation was also detected in one oligodendroglioma, and a BRAF(A598V) in one diffuse astrocytoma. These results suggest that low-grade diffuse gliomas with 1p/19q loss have frequent BRAF gains, and a small fraction of oligodendrogliomas may show BRAF-KIAA1549 fusion.

Indexed as

Chromosomes, Human, Pair 1Chromosomes, Human, Pair 19Brain NeoplasmsGliomaHumansIn Situ Hybridization, FluorescenceMutationNeoplasm GradingOncogene Proteins, FusionProto-Oncogene Proteins B-rafReverse Transcriptase Polymerase Chain ReactionBRAF-KIAA1549 fusion protein, humanBRAF protein, humanOncogene Proteins, FusionProto-Oncogene Proteins B-raf

Identifiers

PMID22568401
PMCPMC8057626
OpenAlexW1930097530

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.