Evidence map›Paper›PMID 22567161›Full record

ArticlePloS one2012

Transcript profiling identifies dynamic gene expression patterns and an important role for Nrf2/Keap1 pathway in the developing mouse esophagus.

Hao Chen, Jianying Li, Haiyan Li, Yuhui Hu, Whitney Tevebaugh, Masayuki Yamamoto, Jianwen Que, Xiaoxin Chen

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Review
  6. PAX9 in Cancer Development.International journal of molecular sciences · 2022
    Review
  7. Development of targeted therapy of NRF2Cellular signalling · 2021
    Review
  8. Article
  9. NOTCH and Esophageal Squamous Cell Carcinoma.Advances in experimental medicine and biology · 2021
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Hao ChenCancer Research Program, JLC-BBRI, North Carolina Central University, Durham, North Carolina, United States of America.
Jianying Li
Haiyan Li
Yuhui Hu
Whitney Tevebaugh
Masayuki Yamamoto
Jianwen Que
Xiaoxin Chen
North Carolina Central University · USUniversity of Rochester · USFrontier Energy (United States) · USTohoku University · JPUniversity of North Carolina at Chapel Hill · US

Funding

Targeting the MEKK2-ERK5 Signaling Node in Triple Negative Breast CancerU54CA156735 · NCI · NORTH CAROLINA CENTRAL UNIVERSITY · PI RICHARDSON, MICHELER RICARDO · 2010 to 2021
$13.0M
The role of transcription factor Sox2 in the homeostasis of the adult esophagusR00DK082650 · NIDDK · UNIVERSITY OF ROCHESTER · PI QUE, JIANWEN · 2012 to 2013
$483k
The Role of transcription factor Sox2 in the homeostasis of the adult esophagusK99DK082650 · NIDDK · UNIVERSITY OF ROCHESTER · PI QUE, JIANWEN · 2010 to 2011
$161k
NCI NIH HHS U54 CA156735NIDDK NIH HHS K99 DK082650NIDDK NIH HHS R00 DK082650
6 · The paper itself

Abstract

BACKGROUND AND

aimsMorphological changes during human and mouse esophageal development have been well characterized. However, changes at the molecular level in the course of esophageal morphogenesis remain unclear. This study aims to globally profile critical genes and signaling pathways during the development of mouse esophagus. By using microarray analysis this study also aims to determine how the Nrf2/Keap1 pathway regulates the morphogenesis of the esophageal epithelium.

methodsGene expression microarrays were used to survey gene expression in the esophagus at three critical phases: specification, metaplasia and maturation. The esophagi were isolated from wild-type, Nrf2(-/-), Keap1(-/-), or Nrf2(-/-)Keap1(-/-) embryos or young adult mice. Array data were statistically analyzed for differentially expressed genes and pathways. Histochemical and immunohistochemical staining were used to verify potential involvement of the Wnt pathway, Pparβ/δ and the PI3K/Akt pathway in the development of esophageal epithelium.

resultsDynamic gene expression patterns accompanied the morphological changes of the developing esophagus at critical phases. Particularly, the Nrf2/Keap1 pathway had a baseline activity in the metaplasia phase and was further activated in the maturation phase. The Wnt pathway was active early and became inactive later in the metaplasia phase. In addition, Keap1(-/-) mice showed increased expression of Nrf2 downstream targets and genes involved in keratinization. Microarray and immunostaining data also suggested that esophageal hyperkeratosis in the Keap1(-/-) mice was due to activation of Pparβ/δ and the PI3K/Akt pathway.

conclusionsMorphological changes of the esophageal epithelium are associated with dynamic changes in gene expression. Nrf2/Keap1 pathway activity is required for maturation of mouse esophageal epithelium.

Indexed as

Adaptor Proteins, Signal TransducingAnimalsCytoskeletal ProteinsEsophagusGene Expression Regulation, DevelopmentalKelch-Like ECH-Associated Protein 1MiceMice, Inbred C57BLNF-E2-Related Factor 2Polymerase Chain ReactionAdaptor Proteins, Signal TransducingCytoskeletal ProteinsKeap1 protein, mouseKelch-Like ECH-Associated Protein 1NF-E2-Related Factor 2

Identifiers

PMID22567161
PMCPMC3342176
OpenAlexW2033169976

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.