Evidence map›Paper›PMID 22567123›Full record

ArticlePloS one2012

Identification of PBX1 target genes in cancer cells by global mapping of PBX1 binding sites.

Michelle M Thiaville, Alexander Stoeck, Li Chen, Ren-Chin Wu, Luca Magnani, Jessica Oidtman, Ie-Ming Shih, Mathieu Lupien, Tian-Li Wang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Research progress of PBX1 in developmental and regenerative medicine.International journal of medical sciences · 2023
    Review
  12. Article
  13. Article
  14. PBX1: a key character of the hallmarks of cancer.Journal of molecular medicine (Berlin, Germany) · 2021
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Oncogenic and tumor suppressor function of MEIS and associated factors.Turkish journal of biology = Turk biyoloji dergisi · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Michelle M ThiavilleDepartment of Pathology, Johns Hopkins Medical Institutions, Baltimore, Maryland, United States of America.
Alexander Stoeck
Li Chen
Ren-Chin Wu
Luca Magnani
Jessica Oidtman
Ie-Ming Shih
Mathieu Lupien
Tian-Li Wang
Johns Hopkins University · USDartmouth College · USVirginia Tech · US

Funding

Proteome Characterization Center: A Genoproteomics Pipeline for Cance ResearchU24CA160036 · NCI · JOHNS HOPKINS UNIVERSITY · PI CHAN, DANIEL WANYUI, ZHANG, HUI · 2011 to 2016
$10.7M
Molecular Diagnostics for Malignant EffusionR01CA103937 · NCI · JOHNS HOPKINS UNIVERSITY · PI SHIH, IE-MING · 2004 to 2012
$2.7M
The Roles of HBXAP Gene in Ovarian CancerR01CA129080 · NCI · JOHNS HOPKINS UNIVERSITY · PI SHIH, IE-MING · 2008 to 2012
$1.7M
Characterizing Notch3 Signaling in Ovarian CancerR01CA148826 · NCI · JOHNS HOPKINS UNIVERSITY · PI WANG, TIAN-LI · 2011 to 2015
$1.7M
NCI NIH HHS R01 CA103937NCI NIH HHS R01CA103937NCI NIH HHS R01 CA129080NCI NIH HHS R01CA129080NCI NIH HHS R01 CA148826NCI NIH HHS R01CA148826NCI NIH HHS U24 CA160036NCI NIH HHS U24CA160036
6 · The paper itself

Abstract

PBX1 is a TALE homeodomain transcription factor involved in organogenesis and tumorigenesis. Although it has been shown that ovarian, breast, and melanoma cancer cells depend on PBX1 for cell growth and survival, the molecular mechanism of how PBX1 promotes tumorigenesis remains unclear. Here, we applied an integrated approach by overlapping PBX1 ChIP-chip targets with the PBX1-regulated transcriptome in ovarian cancer cells to identify genes whose transcription was directly regulated by PBX1. We further determined if PBX1 target genes identified in ovarian cancer cells were co-overexpressed with PBX1 in carcinoma tissues. By analyzing TCGA gene expression microarray datasets from ovarian serous carcinomas, we found co-upregulation of PBX1 and a significant number of its direct target genes. Among the PBX1 target genes, a homeodomain protein MEOX1 whose DNA binding motif was enriched in PBX1-immunoprecipicated DNA sequences was selected for functional analysis. We demonstrated that MEOX1 protein interacts with PBX1 protein and inhibition of MEOX1 yields a similar growth inhibitory phenotype as PBX1 suppression. Furthermore, ectopically expressed MEOX1 functionally rescued the PBX1-withdrawn effect, suggesting MEOX1 mediates the cellular growth signal of PBX1. These results demonstrate that MEOX1 is a critical target gene and cofactor of PBX1 in ovarian cancers.

Indexed as

Binding SitesCell Line, TumorChromatin ImmunoprecipitationDNA-Binding ProteinsFemaleHomeodomain ProteinsHumansOvarian NeoplasmsPre-B-Cell Leukemia Transcription Factor 1Proto-Oncogene ProteinsReal-Time Polymerase Chain ReactionTranscription FactorsDNA-Binding ProteinsHomeodomain ProteinsMEOX1 protein, humanPBX1 protein, humanPre-B-Cell Leukemia Transcription Factor 1Proto-Oncogene ProteinsTranscription Factors

Identifiers

PMID22567123
PMCPMC3342315
OpenAlexW1967260652

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.