Evidence map›Paper›PMID 22564141›Full record

ArticleThe journal of physical chemistry. B2012

Structural transitions of transmembrane helix 6 in the formation of metarhodopsin I.

Markus Eilers, Joseph A Goncalves, Shivani Ahuja, Colleen Kirkup, Amiram Hirshfeld, Carlos Simmerling, Philip J Reeves, Mordechai Sheves, Steven O Smith

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. G protein-coupled receptors--recent advances.Acta biochimica Polonica · 2012
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Markus EilersDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York 11794-5215, United States.
Joseph A Goncalves
Shivani Ahuja
Colleen Kirkup
Amiram Hirshfeld
Carlos Simmerling
Philip J Reeves
Mordechai Sheves
Steven O Smith

Funding

Structure and Activation Mechanism of the Visual Pigment RhodopsinR01GM041412 · NIGMS · YALE UNIVERSITY · PI SMITH, STEVEN OWEN · 1989 to 2014
$4.4M
600 MHZ SOLID STATE NMR SPECTROMETERS10RR013889 · NCRR · STATE UNIVERSITY NEW YORK STONY BROOK · PI SMITH, STEVEN OWEN · 1999 to 1999
–
NCRR NIH HHS S10 RR013889NCRR NIH HHS S10 RR13889NIGMS NIH HHS GM-41412NIGMS NIH HHS R01 GM041412
6 · The paper itself

Abstract

Absorption of light by the visual pigment rhodopsin triggers a rapid cis-trans photoisomerization of its retinal chromophore and a series of conformational changes in both the retinal and protein. The largest structural change is an outward tilt of transmembrane helix H6 that increases the separation of the intracellular ends of H6 and H3 and opens up the G-protein binding site. In the dark state of rhodopsin, Glu247 at the intracellular end of H6 forms a salt bridge with Arg135 on H3 to tether H6 in an inactive conformation. The Arg135-Glu247 interaction is broken in the active state of the receptor, and Arg135 is then stabilized by interactions with Tyr223, Met257, and Tyr306 on helices H5, H6, and H7, respectively. To address the mechanism of H6 motion, solid-state NMR measurements are undertaken of Metarhodopsin I (Meta I), the intermediate preceding the active Metarhodopsin II (Meta II) state of the receptor. (13)C NMR dipolar recoupling measurements reveal an interhelical contact of (13)Cζ-Arg135 with (13)Cε-Met257 in Meta I but not with (13)Cζ-Tyr223 or (13)Cζ-Tyr306. These observations suggest that helix H6 has rotated in the formation of Meta I but that structural changes involving helices H5 and H7 have not yet occurred. Together, our results provide insights into the sequence of events leading up to the outward motion of H6, a hallmark of G protein-coupled receptor activation.

Indexed as

Binding SitesCarbon IsotopesHEK293 CellsHumansIsomerismMagnetic Resonance SpectroscopyMolecular Dynamics SimulationNitrogen IsotopesProtein Structure, SecondaryRecombinant ProteinsRhodopsinCarbon IsotopesmetarhodopsinsNitrogen IsotopesRecombinant ProteinsRhodopsin

Identifiers

PMID22564141
PMCPMC3428503

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.