Evidence map›Paper›PMID 22562994›Full record

ArticleApplied and environmental microbiology2012

Influence of a mannan binding family 32 carbohydrate binding module on the activity of the appended mannanase.

Kimiya Mizutani, Vânia O Fernandes, Shuichi Karita, Ana S Luís, Makiko Sakka, Tetsuya Kimura, Adam Jackson, Xiaoyang Zhang, Carlos M G A Fontes, Harry J Gilbert and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. β-Mannanase-catalyzed synthesis of alkyl mannooligosides.Applied microbiology and biotechnology · 2018
    Article
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  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Kimiya MizutaniApplied Microbiology Laboratory, Graduate School of Bioresources, Mie University, Tsu, Japan.
Vânia O Fernandes
Shuichi Karita
Ana S Luís
Makiko Sakka
Tetsuya Kimura
Adam Jackson
Xiaoyang Zhang
Carlos M G A Fontes
Harry J Gilbert
Kazuo Sakka
Mie University · JPNewcastle University · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G016224/1
6 · The paper itself

Abstract

In general, cellulases and hemicellulases are modular enzymes in which the catalytic domain is appended to one or more noncatalytic carbohydrate binding modules (CBMs). CBMs, by concentrating the parental enzyme at their target polysaccharide, increase the capacity of the catalytic module to bind the substrate, leading to a potentiation in catalysis. Clostridium thermocellum hypothetical protein Cthe_0821, defined here as C. thermocellum Man5A, is a modular protein comprising an N-terminal signal peptide, a family 5 glycoside hydrolase (GH5) catalytic module, a family 32 CBM (CBM32), and a C-terminal type I dockerin module. Recent proteomic studies revealed that Cthe_0821 is one of the major cellulosomal enzymes when C. thermocellum is cultured on cellulose. Here we show that the GH5 catalytic module of Cthe_0821 displays endomannanase activity. C. thermocellum Man5A hydrolyzes soluble konjac glucomannan, soluble carob galactomannan, and insoluble ivory nut mannan but does not attack the highly galactosylated mannan from guar gum, suggesting that the enzyme prefers unsubstituted β-1,4-mannoside linkages. The CBM32 of C. thermocellum Man5A displays a preference for the nonreducing ends of mannooligosaccharides, although the protein module exhibits measurable affinity for the termini of β-1,4-linked glucooligosaccharides such as cellobiose. CBM32 potentiates the activity of C. thermocellum Man5A against insoluble mannans but has no significant effect on the capacity of the enzyme to hydrolyze soluble galactomannans and glucomannans. The product profile of C. thermocellum Man5A is affected by the presence of CBM32.

Indexed as

Acetivibrio thermocellusAmino Acid SequenceCarbohydratesEscherichia coliGalactansGlycoside HydrolasesMannansMannosidasesMolecular Sequence DataPlant GumsRecombinant ProteinsSubstrate Specificity(1-6)-alpha-glucomannanbeta-1,4-mannosidaseCarbohydratesGalactansGlycoside Hydrolasesguar gumMannansMannosidasesPlant GumsRecombinant Proteins

Identifiers

PMID22562994
PMCPMC3416382
OpenAlexW1977165801

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.