Evidence map›Paper›PMID 22562548›Full record

ArticleFunctional & integrative genomics2012

Identification of drought tolerant progenies in tea by gene expression analysis.

Sushmita Gupta, Raju Bharalee, Priyadarshini Bhorali, Tirthankar Bandyopadhyay, Bornali Gohain, Niraj Agarwal, Parveen Ahmed, Hemanta Saikia, Sangeeta Borchetia, M C Kalita and 2 more

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Article in Functional & integrative genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Mechanism of [COInternational journal of molecular sciences · 2022
    Article
  3. Article
  4. Article
  5. Evaluation of tea (Physiology and molecular biology of plants : an international journal of functional plant biology · 2019
    Article
  6. Article
  7. Review
  8. Article
  9. Network Candidate Genes in Breeding for Drought Tolerant Crops.International journal of molecular sciences · 2015
    Review
  10. Article
  11. Article
  12. Drought stress responses in crops.Functional & integrative genomics · 2014
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Sushmita GuptaDepartment of Biotechnology, Plant Improvement Division, Tea Research Association, Tocklai, Jorhat, Assam, India.
Raju Bharalee
Priyadarshini Bhorali
Tirthankar Bandyopadhyay
Bornali Gohain
Niraj Agarwal
Parveen Ahmed
Hemanta Saikia
Sangeeta Borchetia
M C Kalita
A K Handique
Sudripta Das
Tea Research Association · INAssam Agricultural University · INGauhati University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the genes that govern tea plant (Camellia sinensis) architecture and response to drought stress is urgently needed to enhance breeding in tea with improved water use efficiency. Field drought is a slow mechanism and the plants go through an adaptive process in contrast to the drastic changes of rapid dehydration in case of controlled experiments. We identified a set of drought responsive genes under controlled condition using SSH, and validated the identified genes and their pattern of expression under field drought condition. The study was at three stages of water deficit stress viz., before wilting, wilting and recovery, which revealed a set of genes with higher expression at before wilting stage including dehydrin, abscissic acid ripening protein, glutathione peroxidase, cinnamoyl CoA reductase, calmodulin binding protein. The higher expression of these genes was related with increase tolerance character of DT/TS-463 before wilting, these five tolerant progenies could withstand drought stress and thus are candidates for breeding. We observed that physiological parameter like water use efficiency formed a close group with genes such as calmodulin related, DRM3, hexose transporter, hydrogen peroxide induced protein, ACC oxidase, lipase, ethylene responsive transcription factor and diaminopimelate decarboxylase, during wilting point. Our data provides valuable information for the gene components and the dynamics of gene expression in second and third leaf against drought stress in tea, which could be regarded as candidate targets potentially associated with drought tolerance. We propose that the identified five tolerant progenies on the basis of their drought tolerance can thus be utilised for future breeding programmes.

Indexed as

Adaptation, BiologicalDroughtsAmino Acid OxidoreductasesCamellia sinensisComputational BiologyGene Expression ProfilingGene Expression Regulation, PlantGene LibraryGenes, PlantGlutathione PeroxidaseLipasePlant DiseasesPlant LeavesPlant ProteinsPrincipal Component AnalysisStress, Physiological1-aminocyclopropane-1-carboxylic acid oxidaseAmino Acid Oxidoreductasesdehydrin proteins, plantGlutathione PeroxidaseLipasePlant ProteinsTranscription FactorsWater

Identifiers

PMID22562548
OpenAlexW1984310580

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.