Evidence map›Paper›PMID 22561201›Full record

ArticleDevelopmental biology2012

Direct transcriptional regulation of Six6 is controlled by SoxB1 binding to a remote forebrain enhancer.

Bumwhee Lee, Karine Rizzoti, David S Kwon, Seon-Young Kim, Sangtaek Oh, Douglas J Epstein, Youngsook Son, Jaeseung Yoon, Kwanghee Baek, Yongsu Jeong

Abstract read
In one paragraph

Article in Developmental biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

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  13. Genetic regulation of murine pituitary development.Journal of molecular endocrinology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Bumwhee LeeDepartment of Genetic Engineering, College of Life Sciences and Graduate School of Biotechnology, Kyung Hee University, Yongin-si 446-701, Republic of Korea.
Karine Rizzoti
David S Kwon
Seon-Young Kim
Sangtaek Oh
Douglas J Epstein
Youngsook Son
Jaeseung Yoon
Kwanghee Baek
Yongsu Jeong
Kyung Hee University · KRKookmin University · KRKorea Research Institute of Bioscience and Biotechnology · KRUniversity of Pennsylvania · US

Funding

TRANSCRIPTIONAL CONTROL OF SONIC HEDGEHOG SIGNALINGR01NS039421 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI EPSTEIN, DOUGLAS J · 2000 to 2023
$8.5M
Medical Research Council MC_U117562207NINDS NIH HHS R01 NS039421
6 · The paper itself

Abstract

Six6, a sine oculis homeobox protein, plays a crucial and conserved role in the development of the forebrain and eye. To understand how the expression of Six6 is regulated during embryogenesis, we screened ~250 kb of genomic DNA encompassing the Six6 locus for cis-regulatory elements capable of directing reporter gene expression to sites of Six6 transcription in transgenic mouse embryos. Here, we describe two novel enhancer elements, that are highly conserved in vertebrate species and whose activities recapitulate Six6 expression in the ventral forebrain and eye, respectively. Cross-species comparisons of the Six6 forebrain enhancer sequences revealed highly conserved binding sites matching the consensus for homeodomain and SoxB1 transcription factors. Deletion of either of the binding sites resulted in loss of the forebrain enhancer activity in the ventral forebrain. Moreover, our studies show that members of the SoxB1 family, including Sox2 and Sox3, are expressed in the overlapping region of the ventral forebrain with Six6 and can bind to the Six6 forebrain enhancer. Loss of function of SoxB1 genes in vivo further emphasizes their role in regulating Six6 forebrain enhancer activity. Thus, our data strongly suggest that SoxB1 transcription factors are direct activators of Six6 expression in the ventral forebrain.

Indexed as

Enhancer Elements, GeneticAnimalsEyeEye ProteinsGene Expression Regulation, DevelopmentalHomeodomain ProteinsMiceProsencephalonProtein BindingRegulatory Sequences, Nucleic AcidSOXB1 Transcription FactorsTrans-ActivatorsEye ProteinsHomeodomain ProteinsSix6 protein, mouseSOXB1 Transcription FactorsTrans-Activators

Identifiers

PMID22561201
PMCPMC4009495
OpenAlexW2027736387

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.