Evidence map›Paper›PMID 22560733›Full record

ArticleStructure (London, England : 1993)2012

Structural basis for polyadenosine-RNA binding by Nab2 Zn fingers and its function in mRNA nuclear export.

Christoph Brockmann, Sharon Soucek, Sonja I Kuhlmann, Katherine Mills-Lujan, Seth M Kelly, Ji-Chun Yang, Nahid Iglesias, Francoise Stutz, Anita H Corbett, David Neuhaus and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Polyadenylation and nuclear export of mRNAs.The Journal of biological chemistry · 2019
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Christoph BrockmannMedical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.
Sharon Soucek
Sonja I Kuhlmann
Katherine Mills-Lujan
Seth M Kelly
Ji-Chun Yang
Nahid Iglesias
Francoise Stutz
Anita H Corbett
David Neuhaus
Murray Stewart
Emory University · USMedical Research Council · GBMRC Laboratory of Molecular Biology · GB

Funding

Medical Research Council MC_U105178934Medical Research Council MC_U105178939Medical Research Council U105178934Medical Research Council U105178939Wellcome Trust
6 · The paper itself

Abstract

Polyadenylation regulation and efficient nuclear export of mature mRNPs both require the polyadenosine-RNA-binding protein, Nab2, which contains seven CCCH Zn fingers. We describe here the solution structure of fingers 5-7, which are necessary and sufficient for high-affinity polyadenosine-RNA binding, and identify key residues involved. These Zn fingers form a single structural unit. Structural coherence is lost in the RNA-binding compromised Nab2-C437S mutant, which also suppresses the rat8-2 allele of RNA helicase Dbp5. Structure-guided Nab2 variants indicate that dbp5(rat8-2) suppression is more closely linked to hyperadenylation and suppression of mutant alleles of the nuclear RNA export adaptor, Yra1, than to affinity for polyadenosine-RNA. These results indicate that, in addition to modulating polyA tail length, Nab2 has an unanticipated function associated with generating export-competent mRNPs, and that changes within fingers 5-7 lead to suboptimal assembly of mRNP export complexes that are more easily disassembled by Dbp5 upon reaching the cytoplasm.

Indexed as

Active Transport, Cell NucleusRNA TransportAdenosineAmino Acid SequenceAmino Acid SubstitutionConserved SequenceModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedNuclear Magnetic Resonance, BiomolecularNucleocytoplasmic Transport ProteinsPolymersProtein BindingProtein Structure, TertiaryRNA-Binding ProteinsRNA, MessengerAdenosineNAB2 protein, S cerevisiaeNucleocytoplasmic Transport ProteinspolyadenosinePolymersRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiae Proteins

Identifiers

PMID22560733
PMCPMC3384006
OpenAlexW1997095199

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.