Evidence map›Paper›PMID 22560525›Full record

ArticleMayo Clinic proceedings2012

Genetic Loci implicated in erythroid differentiation and cell cycle regulation are associated with red blood cell traits.

Keyue Ding, Khader Shameer, Hayan Jouni, Daniel R Masys, Gail P Jarvik, Abel N Kho, Marylyn D Ritchie, Catherine A McCarty, Christopher G Chute, Teri A Manolio and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Mayo Clinic proceedings, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A Conserved Requirement forFrontiers in physiology · 2019
    Article
  11. Article
  12. Article
  13. Genetic control of erythropoiesis.Current opinion in hematology · 2017
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 2 countries.

Keyue DingDivision of Cardiovascular Diseases, Mayo Clinic, Rochester, MN 55905, USA.
Khader Shameer
Hayan Jouni
Daniel R Masys
Gail P Jarvik
Abel N Kho
Marylyn D Ritchie
Catherine A McCarty
Christopher G Chute
Teri A Manolio
Iftikhar J Kullo
Mayo Clinic · USMayo Clinic in Arizona · USUniversity of Washington · USInstytut Medycyny Wsi im. Witolda Chodźki · PLNational Institutes of Health · USNorthwestern University · USUniversity of Washington Medical Center · US

Funding

Vanderbilt Genome-Electronic Records ProjectU01HG004603 · NHGRI · VANDERBILT UNIVERSITY · PI RODEN, DAN M · 2007 to 2011
$7.3M
Development and Use of Network Infrastructure for High-Throughput GWA StudiesU01HG004610 · NHGRI · KAISER FOUNDATION HEALTH PLAN OF WASHINGTON · PI LARSON, ERIC B · 2007 to 2010
$4.2M
Genetic Discovery and Application in a Clinical Setting Continuing a PartnershipU01HG006375 · NHGRI · KAISER FOUNDATION HEALTH PLAN OF WASHINGTON · PI JARVIK, GAIL PAIRITZ, LARSON, ERIC B · 2011 to 2014
$4.1M
EMR Phenotypes and Community Engaged Genomic AssociationsU01HG004599 · NHGRI · MAYO CLINIC ROCHESTER · PI CHUTE, CHRISTOPHER G · 2007 to 2010
$3.7M
Genome-wide Studies from the NUgene BiorespositoryU01HG004609 · NHGRI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHISHOLM, REX L · 2007 to 2010
$3.7M
Genome-Wide Study of Cataract and Low HDL in the Personalized Medicine Research PU01HG004608 · NHGRI · MARSHFIELD CLINIC RESEARCH FOUNDATION · PI MCCARTY, CATHERINE ANNE · 2007 to 2010
$3.3M
NHGRI NIH HHS U01 HG004599NHGRI NIH HHS U01 HG004603NHGRI NIH HHS U01 HG004608NHGRI NIH HHS U01-HG-004608NHGRI NIH HHS U01 HG004609NHGRI NIH HHS U01HG004609NHGRI NIH HHS U01 HG004610NHGRI NIH HHS U01-HG-004610NHGRI NIH HHS U01 HG006375NHGRI NIH HHS U01-HG-04599NHGRI NIH HHS U01-HG-04603
6 · The paper itself

Abstract

objectiveTo identify common genetic variants influencing red blood cell (RBC) traits. PATIENTS AND

methodsWe performed a genomewide association study from June 2008 through July 2011 of hemoglobin, hematocrit, RBC count, mean corpuscular volume, mean corpuscular hemoglobin, and mean corpuscular hemoglobin concentration in 12,486 patients of European ancestry from the electronic MEdical Records and Genomics (eMERGE) network. We developed an electronic medical record-based algorithm that included individuals who had RBC measurements obtained for clinical care and excluded values measured in the setting of hematopoietic disorders, comorbid conditions, or medications known to affect RBC production or a recent history of blood loss.

resultsWe identified 4 new genetic loci and replicated 11 loci previously reported to be associated with one or more RBC traits in individuals of European ancestry. Notably, genes present in 3 of the 4 newly identified loci (THRB, PTPLAD1, CDT1) and in 6 of the 11 replicated loci (KLF1, ALDH8A1, CCND3, SPTA1, FBXO7, TFR2/EPO) are implicated in erythroid differentiation and regulation of cell cycle in hematopoietic stem cells.

conclusionGenes in the erythroid differentiation and cell cycle regulation pathways influence interindividual variation in RBC indices. Our results provide insights into the molecular basis underlying variation in RBC traits.

Indexed as

Cell DifferentiationErythrocyte IndicesGene FrequencyGenetic Association StudiesGenetics, PopulationHemoglobinsHumansPolymorphism, Single NucleotideQuantitative Trait LociWhite PeopleHemoglobins

Identifiers

PMID22560525
PMCPMC3538470
OpenAlexW1980697072

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.