Evidence map›Paper›PMID 22559943›Full record

ArticleCell2012

Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication.

Megan Y Dennis, Xander Nuttle, Peter H Sudmant, Francesca Antonacci, Tina A Graves, Mikhail Nefedov, Jill A Rosenfeld, Saba Sajjadian, Maika Malig, Holland Kotkiewicz and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 237 papers.

0numbers the graph read from it
0cells of the map it votes in
237citing papers in PubMed
14.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

237 citing papers in PubMed, 429 citations in OpenAlex.

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177 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Megan Y DennisDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, 98195, USA.
Xander Nuttle
Peter H Sudmant
Francesca Antonacci
Tina A Graves
Mikhail Nefedov
Jill A Rosenfeld
Saba Sajjadian
Maika Malig
Holland Kotkiewicz
Cynthia J Curry
Susan Shafer
Lisa G Shaffer
Pieter J de Jong
Richard K Wilson
Evan E Eichler
University of Washington · USWashington University in St. Louis · USPerkinElmer (United States) · USCarle Foundation Hospital · USHoward Hughes Medical Institute · USUniversity of California, San Francisco · US

Funding

INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCEST32HG000035 · NHGRI · UNIVERSITY OF WASHINGTON · PI Bruce Colston Trapnell · 1995 to 2026
$24.2M
Sequence and Assembly of Segmental DuplicationsR01HG002385 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2001 to 2026
$13.3M
Sequencing and Clone CharacterizationP01HG004120 · NHGRI · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 2007 to 2013
$7.7M
MECHANISM &INSTABILITY OF PERICENTROMERIC DUPLICATIONSR01GM058815 · NIGMS · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 1999 to 2010
$2.9M
Genetic & Functional Analysis of Variants Associated with Neurocognitive DisorderF32HD071698 · NICHD · UNIVERSITY OF WASHINGTON · PI DENNIS, MEGAN Y · 2012 to 2013
$89k
Howard Hughes Medical InstituteNHGRI NIH HHS 2T32HG000035-16NHGRI NIH HHS HG002385NHGRI NIH HHS P01 HG004120NHGRI NIH HHS R01 HG002385NHGRI NIH HHS T32 HG000035NICHD NIH HHS 1F32HD071698-01NICHD NIH HHS F32 HD071698NIGMS NIH HHS GM058815NIGMS NIH HHS R01 GM058815
6 · The paper itself

Abstract

Gene duplication is an important source of phenotypic change and adaptive evolution. We leverage a haploid hydatidiform mole to identify highly identical sequences missing from the reference genome, confirming that the cortical development gene Slit-Robo Rho GTPase-activating protein 2 (SRGAP2) duplicated three times exclusively in humans. We show that the promoter and first nine exons of SRGAP2 duplicated from 1q32.1 (SRGAP2A) to 1q21.1 (SRGAP2B) ∼3.4 million years ago (mya). Two larger duplications later copied SRGAP2B to chromosome 1p12 (SRGAP2C) and to proximal 1q21.1 (SRGAP2D) ∼2.4 and ∼1 mya, respectively. Sequence and expression analyses show that SRGAP2C is the most likely duplicate to encode a functional protein and is among the most fixed human-specific duplicate genes. Our data suggest a mechanism where incomplete duplication created a novel gene function-antagonizing parental SRGAP2 function-immediately "at birth" 2-3 mya, which is a time corresponding to the transition from Australopithecus to Homo and the beginning of neocortex expansion.

Indexed as

Evolution, MolecularSegmental Duplications, GenomicAnimalsDNA Copy Number VariationsFemaleGenetics, MedicalGTPase-Activating ProteinsHumansHydatidiform MoleIn Situ Hybridization, FluorescenceMammalsMolecular Sequence DataPregnancyPrimatesGTPase-Activating ProteinsSRGAP2 protein, human

Identifiers

PMID22559943
PMCPMC3365555
OpenAlexW2008677609

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.