Evidence map›Paper›PMID 22559202›Full record

ArticleJournal of proteome research2012

Label-free quantitative LC-MS proteomics of Alzheimer's disease and normally aged human brains.

Victor P Andreev, Vladislav A Petyuk, Heather M Brewer, Yuliya V Karpievitch, Fang Xie, Jennifer Clarke, David Camp, Richard D Smith, Andrew P Lieberman, Roger L Albin and 3 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed.

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  14. Review
  15. Analysis of the mechanism ofThe Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology · 2024
    Article
  16. Proteins linking APOE ɛ4 with Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2024
    Article
  17. Article
  18. Article
  19. Sex-specific declines in cholinergic-targeting tRNA fragments in the nucleus accumbens in Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2023
    Article
  20. Article

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Victor P AndreevDepartment of Psychiatry and Behavioral Sciences, §Department of Biochemistry and Molecular Biology, ⊥Department of Epidemiology and Public Health, ▽Division of Neuroscience, and ○Department of Human Genetics and Genomics, University of Miami Miller School of Medicine , Miami, Florida, United States.
Vladislav A Petyuk
Heather M Brewer
Yuliya V Karpievitch
Fang Xie
Jennifer Clarke
David Camp
Richard D Smith
Andrew P Lieberman
Roger L Albin
Zafar Nawaz
Jimmy El Hokayem
Amanda J Myers

Funding

WORKSHOP AND TRAINING ACTIVITIESP41RR018522 · NCRR · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI BELOV, MIKHAIL · 2003 to 2011
$25.1M
Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
TELEPHONE COUNSELING INTERVENTION TO PROMOTE CAREGIVER SELF CARE BEHAVIORP50AG008671 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GILMAN, SID · 1989 to 2010
$18.9M
THE HUMAN BRAINOME:genome, transcriptome and proteome interaction in human cortexR01AG034504 · NIA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MYERS, AMANDA J · 2009 to 2012
$1.1M
NCRR NIH HHS P41 RR018522NCRR NIH HHS RR18522NIA NIH HHS AG-034504NIA NIH HHS P50 AG008671NIA NIH HHS P50-AG08671NIA NIH HHS R01 AG034504NIGMS NIH HHS P41 GM103493
6 · The paper itself

Abstract

Quantitative proteomics analysis of cortical samples of 10 Alzheimer's disease (AD) brains versus 10 normally aged brains was performed by following the accurate mass and time tag (AMT) approach with the high resolution LTQ Orbitrap mass spectrometer. More than 1400 proteins were identified and quantitated. A conservative approach of selecting only the consensus results of four normalization methods was suggested and used. A total of 197 proteins were shown to be significantly differentially abundant (p-values <0.05, corrected for multiplicity of testing) in AD versus control brain samples. Thirty-seven of these proteins were reported as differentially abundant or modified in AD in previous proteomics and transcriptomics publications. The rest to the best of our knowledge are new. Mapping of the discovered proteins with bioinformatic tools revealed significant enrichment with differentially abundant proteins of pathways and processes known to be important in AD, including signal transduction, regulation of protein phosphorylation, immune response, cytoskeleton organization, lipid metabolism, energy production, and cell death.

Indexed as

AgedAged, 80 and overAlzheimer DiseaseBrainCase-Control StudiesChromatography, LiquidGene Regulatory NetworksHumansMaleProteomeProteomicsReproducibility of ResultsTandem Mass SpectrometryTranscription FactorsProteomeTranscription Factors

Identifiers

PMID22559202
PMCPMC3445701

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.