Evidence map›Paper›PMID 22558123›Full record

ArticlePloS one2012

Biodiversity of mineral nutrient and trace element accumulation in Arabidopsis thaliana.

Ivan Baxter, Christian Hermans, Brett Lahner, Elena Yakubova, Marina Tikhonova, Nathalie Verbruggen, Dai-Yin Chao, David E Salt

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 94 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Potato biofortification: an effective way to fight global hidden hunger.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Review
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  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
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  13. Article
  14. Article
  15. Article
  16. Article
  17. Nutritional variation in baobab (Food science & nutrition · 2017
    Article
  18. Article
  19. Article
  20. Accumulation of trace elements in edible crops and poplar grown on a titanium ore landfill.Environmental science and pollution research international · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Ivan BaxterAgricultural Research Service Plant Genetics Research Unit, Donald Danforth Plant Science Center, United States Department of Agriculture, St. Louis, Missouri, United States of America. ivan.baxter@ars.usda.gov
Christian Hermans
Brett Lahner
Elena Yakubova
Marina Tikhonova
Nathalie Verbruggen
Dai-Yin Chao
David E Salt
Purdue University West Lafayette · USUniversité Libre de Bruxelles · BEUnited States Department of Agriculture · USUniversity of Aberdeen · GB

Funding

The Genetic Basis of Natural Ionomic VariationR01GM078536 · NIGMS · PURDUE UNIVERSITY · PI GUERINOT, MARY LOU · 2007 to 2014
$2.6M
Intramural NIH HHSNIGMS NIH HHS R01 GM078536NIGMS NIH HHS R01 GM78536-01A1
6 · The paper itself

Abstract

In order to grow on soils that vary widely in chemical composition, plants have evolved mechanisms for regulating the elemental composition of their tissues to balance the mineral nutrient and trace element bioavailability in the soil with the requirements of the plant for growth and development. The biodiversity that exists within a species can be utilized to investigate how regulatory mechanisms of individual elements interact and to identify genes important for these processes. We analyzed the elemental composition (ionome) of a set of 96 wild accessions of the genetic model plant Arabidopsis thaliana grown in hydroponic culture and soil using inductively coupled plasma mass spectrometry (ICP-MS). The concentrations of 17-19 elements were analyzed in roots and leaves from plants grown hydroponically, and leaves and seeds from plants grown in artificial soil. Significant genetic effects were detected for almost every element analyzed. We observed very few correlations between the elemental composition of the leaves and either the roots or seeds. There were many pairs of elements that were significantly correlated with each other within a tissue, but almost none of these pairs were consistently correlated across tissues and growth conditions, a phenomenon observed in several previous studies. These results suggest that the ionome of a plant tissue is variable, yet tightly controlled by genes and gene × environment interactions. The dataset provides a valuable resource for mapping studies to identify genes regulating elemental accumulation. All of the ionomic data is available at www.ionomicshub.org.

Indexed as

Genetic VariationAdaptation, BiologicalArabidopsisHydroponicsIonsMass SpectrometryMineralsPlant LeavesPlant RootsSoilTrace ElementsIonsMineralsSoilTrace Elements

Identifiers

PMID22558123
PMCPMC3338729
OpenAlexW1983746088

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.