Evidence map›Paper›PMID 22558076›Full record

Trial reportPloS one2012

Evaluation of SMN protein, transcript, and copy number in the biomarkers for spinal muscular atrophy (BforSMA) clinical study.

Thomas O Crawford, Sergey V Paushkin, Dione T Kobayashi, Suzanne J Forrest, Cynthia L Joyce, Richard S Finkel, Petra Kaufmann, Kathryn J Swoboda, Danilo Tiziano, Rosa Lomastro and 5 more

Registry-linked trialOpen access · goldAbstract readClinical TrialComparative StudyMulticenter Study
In one paragraph

Trial report in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00756821 (A Pilot Study of Biomarkers for Spinal Muscular Atrophy), which is not on this map. Cited by 97 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed, 4 pooled it
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00756821 completednot on this map

A Pilot Study of Biomarkers for Spinal Muscular Atrophy

TypeobservationalSponsorCarelon ResearchRan2008 to 2009Enrolled130ConditionsSpinal Muscular Atrophy
3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 4 syntheses or guidelines pooled it, 157 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Trial
  6. Trial
  7. Trial
  8. Review
  9. Observational
  10. Article
  11. Article
  12. Article
  13. Review
  14. Single NucleotideNeurology. Genetics · 2025
    Article
  15. Article
  16. Patient-specific responses toMolecular therapy. Methods & clinical development · 2024
    Article
  17. Article
  18. Review
  19. Article
  20. Review

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 9 institutions in 2 countries.

Thomas O CrawfordDepartments of Neurology and Pediatrics, The Johns Hopkins University, Baltimore, Maryland, United States of America. tcrawfo@jhmi.edu
Sergey V Paushkin
Dione T Kobayashi
Suzanne J Forrest
Cynthia L Joyce
Richard S Finkel
Petra Kaufmann
Kathryn J Swoboda
Danilo Tiziano
Rosa Lomastro
Rebecca H Li
Felicia L Trachtenberg
Thomas Plasterer
Karen S Chen
Pilot Study of Biomarkers for Spinal Muscular Atrophy Trial Group
Spinal Muscular Atrophy Foundation · USUniversità Cattolica del Sacro Cuore · ITColumbia University · USJohns Hopkins University · USNew England Research Institutes · USNew England Research (United States) · USNortheastern University · USUniversity of Pennsylvania · USUniversity of Utah · US

Funding

HARVARD CLINICAL AND TRANSLATIONAL SCIENCE CENTER (UL1)UL1RR025758 · NCRR · HARVARD MEDICAL SCHOOL · PI NADLER, LEE MARSHALL · 2008 to 2011
$91.4M
Institute for Clinical and Translational Research (UL1)UL1RR025005 · NCRR · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2007 to 2011
$75.8M
INSTITUTIONAL CLINICAL AND TRANSLATIONAL SCIENCE AWARDUL1RR024134 · NCRR · UNIVERSITY OF PENNSYLVANIA · PI FITZGERALD, GARRET A · 2006 to 2011
$70.4M
CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR025780 · NCRR · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2008 to 2011
$61.3M
CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024156 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2006 to 2011
$53.0M
Washington University Institute of Clinical and Translational Sciences (UL1)UL1RR024992 · NCRR · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2007 to 2011
$45.4M
Washington University Institute of Clinical and Translational SciencesUL1TR000448 · NCATS · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2012 to 2016
$41.4M
UNIVERSITY OF IOWA CTSA FOR PEDIATRIC RESEARCHUL1RR024979 · NCRR · UNIVERSITY OF IOWA · PI ROSENTHAL, GARY E · 2007 to 2011
$31.8M
University of Iowa Clinical and Translational Science Program (TL1)UL1RR025755 · NCRR · OHIO STATE UNIVERSITY · PI JACKSON, REBECCA D · 2008 to 2011
$26.3M
UNIVERSITY OF UTAH CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCE-UL1: BPCAUL1RR025764 · NCRR · UNIVERSITY OF UTAH · PI MCCLAIN, DONALD A. · 2008 to 2011
$19.4M
WIRELESS CAPSULE ENDOSCOPY TO EVALUATE THE SMALL INTESTINE M01RR002172 · NCRR · CHILDREN'S HOSPITAL BOSTON · PI GRAND, RICHARD J · 1985 to 2008
$16.0M
University of Iowa Clinical and Translational Science Program (KL2)KL2RR024980 · NCRR · UNIVERSITY OF IOWA · PI ROSENTHAL, GARY E · 2007 to 2011
$4.6M
NCATS NIH HHS UL1 TR000448NCRR NIH HHS 1KL2-RR024980NCRR NIH HHS 1TL1-RR024981NCRR NIH HHS 1UL1-RR024979NCRR NIH HHS C06 RR011234NCRR NIH HHS KL2 RR024980NCRR NIH HHS M01 RR002172NCRR NIH HHS MO1-RR02172NCRR NIH HHS NIH 1 UL1RR024156NCRR NIH HHS NIH UL1-RR-024134NCRR NIH HHS TL1 RR024981NCRR NIH HHS UL1 RR024134NCRR NIH HHS UL1 RR024156NCRR NIH HHS UL1 RR024979NCRR NIH HHS UL1 RR024992NCRR NIH HHS UL1-RR024992NCRR NIH HHS UL1 RR025005NCRR NIH HHS UL1-RR 025005NCRR NIH HHS UL1 RR025755NCRR NIH HHS UL1-RR025755NCRR NIH HHS UL1 RR025758NCRR NIH HHS UL1 RR025758-01NCRR NIH HHS UL1 RR025764NCRR NIH HHS UL1-RR025764NCRR NIH HHS UL1 RR025780NCRR NIH HHS UL1RR025780NICHD NIH HHS R01 HD069045
6 · The paper itself

Abstract

backgroundThe universal presence of a gene (SMN2) nearly identical to the mutated SMN1 gene responsible for Spinal Muscular Atrophy (SMA) has proved an enticing incentive to therapeutics development. Early disappointments from putative SMN-enhancing agent clinical trials have increased interest in improving the assessment of SMN expression in blood as an early "biomarker" of treatment effect.

methodsA cross-sectional, single visit, multi-center design assessed SMN transcript and protein in 108 SMA and 22 age and gender-matched healthy control subjects, while motor function was assessed by the Modified Hammersmith Functional Motor Scale (MHFMS). Enrollment selectively targeted a broad range of SMA subjects that would permit maximum power to distinguish the relative influence of SMN2 copy number, SMA type, present motor function, and age.

resultsSMN2 copy number and levels of full-length SMN2 transcripts correlated with SMA type, and like SMN protein levels, were lower in SMA subjects compared to controls. No measure of SMN expression correlated strongly with MHFMS. A key finding is that SMN2 copy number, levels of transcript and protein showed no correlation with each other.

conclusionThis is a prospective study that uses the most advanced techniques of SMN transcript and protein measurement in a large selectively-recruited cohort of individuals with SMA. There is a relationship between measures of SMN expression in blood and SMA type, but not a strong correlation to motor function as measured by the MHFMS. Low SMN transcript and protein levels in the SMA subjects relative to controls suggest that these measures of SMN in accessible tissues may be amenable to an "early look" for target engagement in clinical trials of putative SMN-enhancing agents. Full length SMN transcript abundance may provide insight into the molecular mechanism of phenotypic variation as a function of SMN2 copy number. TRIAL REGISTRY: Clinicaltrials.gov NCT00756821.

Indexed as

Age FactorsAnalysis of VarianceBiomarkersCase-Control StudiesCross-Sectional StudiesDNA Copy Number VariationsDNA PrimersFemaleHumansMaleMotor ActivityMuscular Atrophy, SpinalProspective StudiesReal-Time Polymerase Chain ReactionSurvival of Motor Neuron 2 ProteinBiomarkersDNA PrimersSMN2 protein, humanSurvival of Motor Neuron 2 Protein

Identifiers

PMID22558076
PMCPMC3338744
OpenAlexW2014207512

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.