Evidence map›Paper›PMID 22558067›Full record

ArticlePloS one2012

Genes in the ureteric budding pathway: association study on vesico-ureteral reflux patients.

Albertien M van Eerde, Karen Duran, Els van Riel, Carolien G F de Kovel, Bobby P C Koeleman, Nine V A M Knoers, Kirsten Y Renkema, Henricus J R van der Horst, Arend Bökenkamp, Johanna M van Hagen and 7 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 38 citations in OpenAlex.

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  20. Genetics of Vesicoureteral Reflux.Current genomics · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 1 country.

Albertien M van EerdeDepartment of Medical Genetics, University Medical Center Utrecht, Utrecht, The Netherlands.
Karen Duran
Els van Riel
Carolien G F de Kovel
Bobby P C Koeleman
Nine V A M Knoers
Kirsten Y Renkema
Henricus J R van der Horst
Arend Bökenkamp
Johanna M van Hagen
Leonard H van den Berg
Katja P Wolffenbuttel
Joop van den Hoek
Wouter F Feitz
Tom P V M de Jong
Jacques C Giltay
Cisca Wijmenga
University Medical Center Utrecht · NLAmsterdam UMC Location VUmc · NLErasmus MC - Sophia Children’s Hospital · NLAcademic Medical Center · NLRadboud University Nijmegen · NLUniversity of Groningen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vesico-ureteral reflux (VUR) is the retrograde passage of urine from the bladder to the urinary tract and causes 8.5% of end-stage renal disease in children. It is a complex genetic developmental disorder, in which ectopic embryonal ureteric budding is implicated in the pathogenesis. VUR is part of the spectrum of Congenital Anomalies of the Kidney and Urinary Tract (CAKUT). We performed an extensive association study for primary VUR using a two-stage, case-control design, investigating 44 candidate genes in the ureteric budding pathway in 409 Dutch VUR patients. The 44 genes were selected from the literature and a set of 567 single nucleotide polymorphisms (SNPs) capturing their genetic variation was genotyped in 207 cases and 554 controls. The 14 SNPs with p<0.005 were included in a follow-up study in 202 cases and 892 controls. Of the total cohort, ~50% showed a clear-cut primary VUR phenotype and ~25% had both a duplex collecting system and VUR. We also looked for association in these two extreme phenotype groups. None of the SNPs reached a significant p-value. Common genetic variants in four genes (GREM1, EYA1, ROBO2 and UPK3A) show a trend towards association with the development of primary VUR (GREM1, EYA1, ROBO2) or duplex collecting system (EYA1 and UPK3A). SNPs in three genes (TGFB1, GNB3 and VEGFA) have been shown to be associated with VUR in other populations. Only the result of rs1800469 in TGFB1 hinted at association in our study. This is the first extensive study of common variants in the genes of the ureteric budding pathway and the genetic susceptibility to primary VUR.

Indexed as

Genetic VariationCase-Control StudiesGenetic Association StudiesGenotypeHumansIntercellular Signaling Peptides and ProteinsIntracellular Signaling Peptides and ProteinsLinkage DisequilibriumMorphogenesisNetherlandsNuclear ProteinsPolymorphism, Single NucleotideProtein Tyrosine PhosphatasesReceptors, ImmunologicRoundabout ProteinsTransforming Growth Factor beta1EYA1 protein, humanGREM1 protein, humanIntercellular Signaling Peptides and ProteinsIntracellular Signaling Peptides and ProteinsNuclear ProteinsProtein Tyrosine PhosphatasesReceptors, ImmunologicROBO2 protein, humanRoundabout ProteinsTGFB1 protein, humanTransforming Growth Factor beta1UPK3A protein, humanUroplakin III

Identifiers

PMID22558067
PMCPMC3338743
OpenAlexW2145619100

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.