Evidence map›Paper›PMID 22556363›Full record

ArticleHuman molecular genetics2012

A non-human primate system for large-scale genetic studies of complex traits.

Anna J Jasinska, Michelle K Lin, Susan Service, Oi-Wa Choi, Joseph DeYoung, Olivera Grujic, Sit-Yee Kong, Yoon Jung, Mathew J Jorgensen, Lynn A Fairbanks and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 52 citations in OpenAlex.

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  13. Dissecting impulsivity and its relationships to drug addictions.Annals of the New York Academy of Sciences · 2014
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 3 countries.

Anna J JasinskaCenter for Neurobehavioral Genetics, Semel Institute for Neuroscience & Human Behavior, University of California, Los Angeles, CA 90095, USA.
Michelle K Lin
Susan Service
Oi-Wa Choi
Joseph DeYoung
Olivera Grujic
Sit-Yee Kong
Yoon Jung
Mathew J Jorgensen
Lynn A Fairbanks
Trudy Turner
Rita M Cantor
Jessica Wasserscheid
Ken Dewar
Wesley Warren
Richard K Wilson
George Weinstock
J David Jentsch
Nelson B Freimer
University of California, Los Angeles · USWashington University in St. Louis · USMcGill University and Génome Québec Innovation Centre · CAUniversität Trier · DEUniversity of Wisconsin–Milwaukee · USWake Forest University · US

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
Vervet Research Colony as a Biomedical ResourceP40OD010965 · OD · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI Matthew Jorgensen · 2012 to 2026
$14.6M
Integrative Center for Neurogenetics and Neurogenomics - OverallP30NS062691 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI COPPOLA, GIOVANNI · 2009 to 2018
$7.4M
Vervet Monkey (Cercopithecus Aethiops) Genetic MapR01RR016300 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI FREIMER, NELSON B. · 2002 to 2011
$6.3M
VERVET RESEARCH COLONY AS A BIOMEDICAL RESOURCE: AIDSP40RR019963 · NCRR · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI KAPLAN, JAY ROSS · 2005 to 2011
$6.2M
Translational Methods/Facilities Core (TMF - Core) (8 of 8)PL1NS062410 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI EVANS, CHRISTOPHER J. · 2007 to 2011
$4.6M
Translational Models of Memory and Cognitive Control (Component 5 of 8)RL1MH083270 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI JENTSCH, J. DAVID · 2007 to 2011
$2.6M
Consortium for Neuropsychiatric Phenomics-Coordinating Center (1 of 8)UL1DE019580 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BILDER, ROBERT M · 2008 to 2011
$1.9M
Integrated Genetic and Genomic Resources for a Model SystemR01OD010980 · OD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI FREIMER, NELSON B. · 2012 to 2012
$741k
NCRR NIH HHS P40 RR019963NCRR NIH HHS P40RR019963NCRR NIH HHS R01 RR016300NCRR NIH HHS R01RR016300NHGRI NIH HHS U54 HG003079NHGRI NIH HHS U54HG003079NIDCR NIH HHS UL1 DE019580NIH HHS P40 OD010965NIH HHS P40OD010965NIH HHS R01 OD010980NIH HHS R01OD010980NIMH NIH HHS RL1 MH083270NIMH NIH HHS RL1MH083270NINDS NIH HHS P30 NS062691NINDS NIH HHS P30NS062691NINDS NIH HHS PL1 NS062410NINDS NIH HHS PL1NS062410PHS HHS UL1DEO19580
6 · The paper itself

Abstract

Non-human primates provide genetic model systems biologically intermediate between humans and other mammalian model organisms. Populations of Caribbean vervet monkeys (Chlorocebus aethiops sabaeus) are genetically homogeneous and large enough to permit well-powered genetic mapping studies of quantitative traits relevant to human health, including expression quantitative trait loci (eQTL). Previous transcriptome-wide investigation in an extended vervet pedigree identified 29 heritable transcripts for which levels of expression in peripheral blood correlate strongly with expression levels in the brain. Quantitative trait linkage analysis using 261 microsatellite markers identified significant (n = 8) and suggestive (n = 4) linkages for 12 of these transcripts, including both cis- and trans-eQTL. Seven transcripts, located on different chromosomes, showed maximum linkage to markers in a single region of vervet chromosome 9; this observation suggests the possibility of a master trans-regulator locus in this region. For one cis-eQTL (at B3GALTL, beta-1,3-glucosyltransferase), we conducted follow-up single nucleotide polymorphism genotyping and fine-scale association analysis in a sample of unrelated Caribbean vervets, localizing this eQTL to a region of <200 kb. These results suggest the value of pedigree and population samples of the Caribbean vervet for linkage and association mapping studies of quantitative traits. The imminent whole genome sequencing of many of these vervet samples will enhance the power of such investigations by providing a comprehensive catalog of genetic variation.

Indexed as

Quantitative Trait LociAnimalsCaribbean RegionChlorocebus aethiopsGenetic LinkageGenomeGlucuronosyltransferaseMicrosatellite RepeatsPedigreePolymorphism, Single NucleotidePrimatesGlucuronosyltransferaseglucuronyltransferase GlcAT-1

Identifiers

PMID22556363
PMCPMC3392106
OpenAlexW2118865894

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.