Evidence map›Paper›PMID 22556278›Full record

ArticleMolecular & cellular proteomics : MCP2012

Mapping of O-GlcNAc sites of 20 S proteasome subunits and Hsp90 by a novel biotin-cystamine tag.

Thorsten Overath, Ulrike Kuckelkorn, Petra Henklein, Britta Strehl, David Bonar, Alexander Kloss, Dagmar Siele, Peter-Michael Kloetzel, Katharina Janek

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 65 citations in OpenAlex.

  1. Review
  2. Review
  3. The Role of Glycosyltransferases in Colorectal Cancer.International journal of molecular sciences · 2021
    Review
  4. Role ofPhysiological reviews · 2021
    Review
  5. Review
  6. Review
  7. Review
  8. O-GlcNAcylation and its role in the immune system.Journal of biomedical science · 2020
    Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Chemical Glycoproteomics.Chemical reviews · 2016
    Review
  14. Article
  15. Review
  16. Global Analysis of O-GlcNAc Glycoproteins in Activated Human T Cells.Journal of immunology (Baltimore, Md. : 1950) · 2016
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Thorsten OverathInstitut für Biochemie, Charité-Universitätsmedizin Berlin, 13347 Berlin, Germany.
Ulrike Kuckelkorn
Petra Henklein
Britta Strehl
David Bonar
Alexander Kloss
Dagmar Siele
Peter-Michael Kloetzel
Katharina Janek
Charité - Universitätsmedizin Berlin · DEChristian-Albrechts-Universität zu Kiel · DESiemens Healthineers (Germany) · DEUniversity of Cologne · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The post-translational modification of proteins with O-GlcNAc is involved in various cellular processes including signal transduction, transcription, translation, and nuclear transport. This transient protein modification enables cells or tissues to adapt to nutrient conditions or stress. O-Glycosylation of the 26 S proteasome ATPase subunit Rpt2 is known to influence the stability of proteins by reducing their proteasome-dependent degradation. In contrast, knowledge of the sites of O-GlcNAcylation on the subunits of the catalytic core of the 26 S proteasome, the 20 S proteasome, and the impact on proteasome activity is very limited. This is predominantly because O-GlcNAc modifications are often substoichiometric and because 20 S proteasomes represent a complex protein mixture of different subtypes. Therefore, identification of O-GlcNAcylation sites on proteasome subunits essentially requires effective enrichment strategies. Here we describe an adapted β-elimination-based derivatization method of O-GlcNAc peptides using a novel biotin-cystamine tag. The specificity of the reaction was increased by differential isotopic labeling with either "light" biotin-cystamine or deuterated "heavy" biotin-cystamine. The enriched peptides were analyzed by LC-MALDI-TOF/TOF-MS and relatively quantified. The method was optimized using bovine α-crystallin and then applied to murine 20 S proteasomes isolated from spleen and brain and murine Hsp90 isolated from liver. Using this approach, we identified five novel and one known O-GlcNAc sites within the murine 20 S proteasome core complex that are located on five different subunits and in addition two novel O-GlcNAc sites on murine Hsp90β, of which one corresponds to a previously described phosphorylation site.

Indexed as

Acetylglucosaminealpha-CrystallinsAmino Acid SequenceAnimalsBinding SitesBiotinBlotting, WesternCarbon RadioisotopesCattleChromatography, LiquidCystamineGlucoseGlycosylationHSP90 Heat-Shock ProteinsMiceMice, Inbred C57BLAcetylglucosaminealpha-CrystallinsBiotinCarbon RadioisotopesCystamineGlucoseHSP90 Heat-Shock ProteinsPeptidesProteasome Endopeptidase Complex

Identifiers

PMID22556278
PMCPMC3412975
OpenAlexW1974691400

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.