Evidence map›Paper›PMID 22550619›Full record

ArticleCell reports2012

Functional consequences of subunit diversity in RNA polymerases II and V.

Ek Han Tan, Todd Blevins, Thomas S Ream, Craig S Pikaard

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Characterization of Local and Systemic Impact of Whitefly (International journal of molecular sciences · 2020
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Epigenetic regulation in plants.Cold Spring Harbor perspectives in biology · 2014
    Review
  12. Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Ek Han TanDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Todd Blevins
Thomas S Ream
Craig S Pikaard
Indiana University Bloomington · USHoward Hughes Medical Institute · USUniversity of Wisconsin–Madison · US

Funding

MOLECULAR BIOLOGY AND BIOPHYSICST32GM007759 · NIGMS · UNIVERSITY OF OREGON · PI NOLEN, BRADLEY J · 1985 to 2021
$8.5M
Roles of RNA Polymerases IV and V in siRNA-mediated gene silencingR01GM077590 · NIGMS · WASHINGTON UNIVERSITY · PI PIKAARD, CRAIG STUART · 2006 to 2020
$3.5M
Howard Hughes Medical InstituteNIGMS NIH HHS GM07759NIGMS NIH HHS R01 GM077590NIGMS NIH HHS T32 GM007759
6 · The paper itself

Abstract

Multisubunit RNA polymerases IV and V (Pol IV and Pol V) evolved as specialized forms of Pol II that mediate RNA-directed DNA methylation (RdDM) and transcriptional silencing of transposons, viruses, and endogenous repeats in plants. Among the subunits common to Arabidopsis thaliana Pols II, IV, and V are 93% identical alternative ninth subunits, NRP(B/D/E)9a and NRP(B/D/E)9b. The 9a and 9b subunit variants are incompletely redundant with respect to Pol II; whereas double mutants are embryo lethal, single mutants are viable, yet phenotypically distinct. Likewise, 9a or 9b can associate with Pols IV or V but RNA-directed DNA methylation is impaired only in 9b mutants. Based on genetic and molecular tests, we attribute the defect in RdDM to impaired Pol V function. Collectively, our results reveal a role for the ninth subunit in RNA silencing and demonstrate that subunit diversity generates functionally distinct subtypes of RNA polymerases II and V.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsCrosses, GeneticDNA, BacterialDNA-Directed RNA PolymerasesDNA MethylationGene Expression Regulation, PlantGene SilencingMolecular Sequence DataMutationPhylogenyPlants, Genetically ModifiedProtein SubunitsRNA, MessengerRNA Polymerase IIArabidopsis ProteinsDNA, BacterialDNA-Directed RNA PolymerasesProtein SubunitsRNA, MessengerRNA Polymerase IIRNA polymerase IV, ArabidopsisRNA polymerase V, ArabidopsisT-DNA

Identifiers

PMID22550619
PMCPMC3339255
OpenAlexW2071203524

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.