ArticleJournal of biomedicine & biotechnology2012
MarVis-Filter: ranking, filtering, adduct and isotope correction of mass spectrometry data.
Article in Journal of biomedicine & biotechnology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Exploring the biochemical and biological functions of copper radical oxidases in the vascular wilt phytopathogenApplied and environmental microbiology · 2026Article
- Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum.mSystems · 2024Article
- Augmented region of interest for untargeted metabolomics mass spectrometry (AriumMS) of multi-platform-based CE-MS and LC-MS data.Analytical and bioanalytical chemistry · 2023Article
- N-Hydroxy pipecolic acid methyl ester is involved in Arabidopsis immunity.Journal of experimental botany · 2023Article
- Metabolomics to Exploit the Primed Immune System of Tomato Fruit.Metabolites · 2020Article
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- Metabolite profiling of non-sterile rhizosphere soil.The Plant journal : for cell and molecular biology · 2017Article
- Systemic resistance in citrus to Tetranychus urticae induced by conspecifics is transmitted by grafting and mediated by mobile amino acids.Journal of experimental botany · 2016Article
- Spore Density Determines Infection Strategy by the Plant Pathogenic Fungus Plectosphaerella cucumerina.Plant physiology · 2016Article
- Functional Characterization of CYP94-Genes and Identification of a Novel Jasmonate Catabolite in Flowers.PloS one · 2016Article
- Priming by Hexanoic Acid Induce Activation of Mevalonic and Linolenic Pathways and Promotes the Emission of Plant Volatiles.Frontiers in plant science · 2016Article
- Meta-analysis of pathway enrichment: combining independent and dependent omics data sets.PloS one · 2014Article
- Article
- Preparing to fight back: generation and storage of priming compounds.Frontiers in plant science · 2014Article
- Disruption of the ammonium transporter AMT1.1 alters basal defenses generating resistance against Pseudomonas syringae and Plectosphaerella cucumerina.Frontiers in plant science · 2014Article
- MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data.Metabolomics : Official journal of the Metabolomic SocietyArticle
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6 authors.
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Abstract
Statistical ranking, filtering, adduct detection, isotope correction, and molecular formula calculation are essential tasks in processing mass spectrometry data in metabolomics studies. In order to obtain high-quality data sets, a framework which incorporates all these methods is required. We present the MarVis-Filter software, which provides well-established and specialized methods for processing mass spectrometry data. For the task of ranking and filtering multivariate intensity profiles, MarVis-Filter provides the ANOVA and Kruskal-Wallis tests with adjustment for multiple hypothesis testing. Adduct and isotope correction are based on a novel algorithm which takes the similarity of intensity profiles into account and allows user-defined ionization rules. The molecular formula calculation utilizes the results of the adduct and isotope correction. For a comprehensive analysis, MarVis-Filter provides an interactive interface to combine data sets deriving from positive and negative ionization mode. The software is exemplarily applied in a metabolic case study, where octadecanoids could be identified as markers for wounding in plants.
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