Evidence map›Paper›PMID 22549775›Full record

ArticleThe Journal of biological chemistry2012

Cross-comparison of protein recognition of sialic acid diversity on two novel sialoglycan microarrays.

Vered Padler-Karavani, Xuezheng Song, Hai Yu, Nancy Hurtado-Ziola, Shengshu Huang, Saddam Muthana, Harshal A Chokhawala, Jiansong Cheng, Andrea Verhagen, Martijn A Langereis and 10 more

Abstract readComparative StudyValidation Study
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Serum antibody screening using glycan arrays.Chemical Society reviews · 2024
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Sialoglycan-binding patterns of bacterial ABThe Journal of biological chemistry · 2022
    Article
  18. Chemoenzymatic Synthesis of Sialosides Containing 7-The Journal of organic chemistry · 2021
    Article
  19. Article
  20. Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Vered Padler-KaravaniDepartment of Medicine and Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093, USA.
Xuezheng Song
Hai Yu
Nancy Hurtado-Ziola
Shengshu Huang
Saddam Muthana
Harshal A Chokhawala
Jiansong Cheng
Andrea Verhagen
Martijn A Langereis
Ralf Kleene
Melitta Schachner
Raoul J de Groot
Yi Lasanajak
Haruo Matsuda
Richard Schwab
Xi Chen
David F Smith
Richard D Cummings
Ajit Varki

Funding

Structural Basis of Immune Recognition of Glycosylated AntigensU54GM062116 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI HEAD, STEVEN R · 2001 to 2010
$80.3M
BIOSYNTHESIS AND REGULATION OF SUBSTITUTED SIALIC ACIDSR01GM032373 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VARKI, AJIT P · 1985 to 2022
$6.9M
SULFATED OLIGOSACCHARIDES OF NORMAL AND MALIGNANT CELLSR01CA038701 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VARKI, AJIT P · 1985 to 2015
$5.5M
Shotgun Glycomics: Linking Glycan Structure and FunctionR01GM085448 · NIGMS · EMORY UNIVERSITY · PI SMITH, DAVID FLETCHER · 2008 to 2011
$2.3M
Neu5Gc and anti-Neu5Gc antibodies for detection of cancer and cancer riskU01CA128442 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VARKI, AJIT P · 2007 to 2011
$2.1M
Studies of Naturally Occurring Structurally Modified CarbohydratesR01GM076360 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CHEN, XI · 2006 to 2010
$1.9M
NCI NIH HHS R01 CA038701NCI NIH HHS U01 CA128442NIGMS NIH HHS GM62116NIGMS NIH HHS R01 GM032373NIGMS NIH HHS R01 GM076360NIGMS NIH HHS R01GM076360NIGMS NIH HHS R01 GM085448NIGMS NIH HHS R01GM085448NIGMS NIH HHS R01GM32373NIGMS NIH HHS U54 GM062116
6 · The paper itself

Abstract

DNA and protein arrays are commonly accepted as powerful exploratory tools in research. This has mainly been achieved by the establishment of proper guidelines for quality control, allowing cross-comparison between different array platforms. As a natural extension, glycan microarrays were subsequently developed, and recent advances using such arrays have greatly enhanced our understanding of protein-glycan recognition in nature. However, although it is assumed that biologically significant protein-glycan binding is robustly detected by glycan microarrays, there are wide variations in the methods used to produce, present, couple, and detect glycans, and systematic cross-comparisons are lacking. We address these issues by comparing two arrays that together represent the marked diversity of sialic acid modifications, linkages, and underlying glycans in nature, including some identical motifs. We compare and contrast binding interactions with various known and novel plant, vertebrate, and viral sialic acid-recognizing proteins and present a technical advance for assessing specificity using mild periodate oxidation of the sialic acid chain. These data demonstrate both the diversity of sialic acids and the analytical power of glycan arrays, showing that different presentations in different formats provide useful and complementary interpretations of glycan-binding protein specificity. They also highlight important challenges and questions for the future of glycan array technology and suggest that glycan arrays with similar glycan structures cannot be simply assumed to give similar results.

Indexed as

GlycomicsProtein Array AnalysisAcetylationAntibodiesAntibody SpecificityAntigens, CDCell Adhesion MoleculesGlycolipidsLectinsN-Acetylneuraminic AcidOxidation-ReductionPeriodic AcidPlant LectinsPolysaccharidesReproducibility of ResultsSialic Acid Binding Immunoglobulin-like LectinsAntibodiesAntigens, CDCell Adhesion MoleculesCHL1 protein, humanGlycolipidsLectinsmetaperiodateN-Acetylneuraminic AcidPeriodic AcidPlant LectinsPolysaccharidesSialic Acid Binding Immunoglobulin-like LectinssialoglycolipidsSIGLEC9 protein, human

Identifiers

PMID22549775
PMCPMC3391140

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.