Evidence map›Paper›PMID 22547686›Full record

ArticleMolecular and cellular biology2012

The super elongation complex family of RNA polymerase II elongation factors: gene target specificity and transcriptional output.

Zhuojuan Luo, Chengqi Lin, Erin Guest, Alexander S Garrett, Nima Mohaghegh, Selene Swanson, Stacy Marshall, Laurence Florens, Michael P Washburn, Ali Shilatifard

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 189 citations in OpenAlex.

  1. SEC Mediates mAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Zhuojuan LuoStowers Institute for Medical Research, Kansas City, Missouri, USA.
Chengqi Lin
Erin Guest
Alexander S Garrett
Nima Mohaghegh
Selene Swanson
Stacy Marshall
Laurence Florens
Michael P Washburn
Ali Shilatifard
Stowers Institute for Medical Research · USUniversity of Kansas Medical Center · US

Funding

Physiological Role of MLL and ELL Proteins in LeukemiaR01CA089455 · NCI · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI SHILATIFARD, ALI · 2001 to 2015
$3.5M
The COMPASS family of H3K4 methylases in development and cancerR01CA150265 · NCI · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI SHILATIFARD, ALI · 2010 to 2015
$2.9M
NCI NIH HHS R01 CA089455NCI NIH HHS R01 CA150265NCI NIH HHS R01CA150265NCI NIH HHS R01CA89455
6 · The paper itself

Abstract

The elongation stage of transcription is highly regulated in metazoans. We previously purified the AFF1- and AFF4-containing super elongation complex (SEC) as a major regulator of development and cancer pathogenesis. Here, we report the biochemical isolation of SEC-like 2 (SEC-L2) and SEC-like 3 (SEC-L3) containing AFF2 and AFF3 in association with P-TEFb, ENL/MLLT1, and AF9/MLLT3. The SEC family members demonstrate high levels of polymerase II (Pol II) C-terminal domain kinase activity; however, only SEC is required for the proper induction of the HSP70 gene upon stress. Genome-wide mRNA-Seq analyses demonstrated that SEC-L2 and SEC-L3 control the expression of different subsets of genes, while AFF4/SEC plays a more dominant role in rapid transcriptional induction in cells. MYC is one of the direct targets of AFF4/SEC, and SEC recruitment to the MYC gene regulates its expression in different cancer cells, including those in acute myeloid or lymphoid leukemia. These findings suggest that AFF4/SEC could be a potential therapeutic target for the treatment of leukemia or other cancers associated with MYC overexpression.

Indexed as

Base SequenceCell LineGene Expression RegulationGene Knockdown TechniquesGenes, mycHEK293 CellsHSP70 Heat-Shock ProteinsHumansJurkat CellsLeukemiaMultiprotein ComplexesNuclear ProteinsPositive Transcriptional Elongation Factor BRepressor ProteinsRNA, MessengerRNA, NeoplasmAFF2 protein, humanAFF3 protein, humanAFF4 protein, humanHSP70 Heat-Shock ProteinsMultiprotein ComplexesNuclear ProteinsPositive Transcriptional Elongation Factor BRepressor ProteinsRNA, MessengerRNA, NeoplasmRNA Polymerase IITranscriptional Elongation Factors

Identifiers

PMID22547686
PMCPMC3434493
OpenAlexW2171426529

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.