Evidence map›Paper›PMID 22547097›Full record

ArticleThe Journal of biological chemistry2012

Multiple DNA binding domains mediate the function of the ERCC1-XPF protein in nucleotide excision repair.

Yan Su, Barbara Orelli, Advaitha Madireddy, Laura J Niedernhofer, Orlando D Schärer

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Mechanism of action of nucleotide excision repair machinery.Biochemical Society transactions · 2022
    Review
  6. Review
  7. ERCC1-XPF targeting to psoralen-DNA crosslinks depends on XPA and FANCD2.Cellular and molecular life sciences : CMLS · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Yan SuDepartment of Chemistry, Stony Brook University, Stony Brook, New York 11794-3400, USA.
Barbara Orelli
Advaitha Madireddy
Laura J Niedernhofer
Orlando D Schärer
Stony Brook University · USUniversity of Pittsburgh · USUPMC Hillman Cancer Center · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
The contribution of DNA interstrand crosslinks to agingR01ES016114 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NIEDERNHOFER, LAURA JANE · 2007 to 2011
$2.5M
Coordination of the late steps of human nucleotide excision repairR01GM080454 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SCHARER, ORLANDO D. · 2007 to 2010
$1.4M
NCI NIH HHS CA092584NCI NIH HHS P01 CA092584NIEHS NIH HHS R01 ES016114NIGMS NIH HHS GM080454NIGMS NIH HHS R01 GM080454
6 · The paper itself

Abstract

ERCC1-XPF is a heterodimeric, structure-specific endonuclease that cleaves single-stranded/double-stranded DNA junctions and has roles in nucleotide excision repair (NER), interstrand crosslink (ICL) repair, homologous recombination, and possibly other pathways. In NER, ERCC1-XPF is recruited to DNA lesions by interaction with XPA and incises the DNA 5' to the lesion. We studied the role of the four C-terminal DNA binding domains in mediating NER activity and cleavage of model substrates. We found that mutations in the helix-hairpin-helix domain of ERCC1 and the nuclease domain of XPF abolished cleavage activity on model substrates. Interestingly, mutations in multiple DNA binding domains were needed to significantly diminish NER activity in vitro and in vivo, suggesting that interactions with proteins in the NER incision complex can compensate for some defects in DNA binding. Mutations in DNA binding domains of ERCC1-XPF render cells more sensitive to the crosslinking agent mitomycin C than to ultraviolet radiation, suggesting that the ICL repair function of ERCC1-XPF requires tighter substrate binding than NER. Our studies show that multiple domains of ERCC1-XPF contribute to substrate binding, and are consistent with models of NER suggesting that multiple weak protein-DNA and protein-protein interactions drive progression through the pathway. Our findings are discussed in the context of structural studies of individual domains of ERCC1-XPF and of its role in multiple DNA repair pathways.

Indexed as

DNA RepairMutationAnimalsAnisotropyCHO CellsCricetinaeDNADNA-Binding ProteinsEndonucleasesHumansKineticsLentivirusMicroscopy, FluorescenceMutagenesis, Site-DirectedProtein BindingProtein ConformationDNADNA-Binding ProteinsEndonucleasesERCC1 protein, humanxeroderma pigmentosum group F protein

Identifiers

PMID22547097
PMCPMC3381147
OpenAlexW2021982887

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.