ReviewGenome biology2012
Current challenges in de novo plant genome sequencing and assembly.
Review in Genome biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
80 citing papers in PubMed.
- A Draft Genome Assembly ofPlants (Basel, Switzerland) · 2026Article
- A pangenome-based approach reveals genes associated with polyploidy and apomixis in Eragrostis curvula.The plant genome · 2026Article
- A Brief Overview of the Epigenetic Regulatory Mechanisms in Plants.International journal of molecular sciences · 2025Review
- Article
- Genetic structure and first genome-wide insights into the adaptation of a wild relative of grapevine,Evolutionary applications · 2023Article
- Article
- A long-read and short-read transcriptomics approach provides the first high-quality reference transcriptome and genome annotation for Pseudotsuga menziesii (Douglas-fir).G3 (Bethesda, Md.) · 2023Article
- From tetraploid to diploid, a pangenomic approach to identify genes lost during synthetic diploidization ofFrontiers in plant science · 2023Article
- Genomic data is missing for many highly invasive species, restricting our preparedness for escalating incursion rates.Scientific reports · 2022Article
- Review
- Applications of Optical Mapping for Plant Genome Assembly and Structural Variation Detection.Methods in molecular biology (Clifton, N.J.) · 2022Article
- EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics.NAR genomics and bioinformatics · 2021Article
- Hyperspectral Image Classification Using Deep Genome Graph-Based Approach.Sensors (Basel, Switzerland) · 2021Article
- Long-read transcriptome and other genomic resources for the angiosperm Silene noctiflora.G3 (Bethesda, Md.) · 2021Article
- Recent advances in Cannabis sativa genomics research.The New phytologist · 2021Review
- Chromosome Level Assembly of Homozygous Inbred Line 'Wongyo 3115' Facilitates the Construction of a High-Density Linkage Map and Identification of QTLs Associated With Fruit Firmness in Octoploid Strawberry (Frontiers in plant science · 2021Article
- Genome Survey Sequencing of In Vivo Mother Plant and In Vitro Plantlets ofPlants (Basel, Switzerland) · 2020Article
- Raw transcriptomics data to gene specific SSRs: a validated free bioinformatics workflow for biologists.Scientific reports · 2020Article
- The GAMYB gene in rye: sequence, polymorphisms, map location, allele-specific markers, and relationship with α-amylase activity.BMC genomics · 2020Article
- Improved reconstruction and comparative analysis of chromosome 12 to rectify Mis-assemblies in Gossypium arboreum.BMC genomics · 2020Article
20 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
Genome sequencing is now affordable, but assembling plant genomes de novo remains challenging. We assess the state of the art of assembly and review the best practices for the community.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.