Evidence map›Paper›PMID 22544723›Full record

ArticleProteins2012

Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata.

Parthasarathy Sampathkumar, Seung Joong Kim, Danalyn Manglicmot, Kevin T Bain, Jeremiah Gilmore, Tarun Gheyi, Jeremy Phillips, Ursula Pieper, Javier Fernandez-Martinez, Josef D Franke and 11 more

Open access · greenAbstract read
In one paragraph

Article in Proteins, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. The Structure of the Nuclear Pore Complex (An Update).Annual review of biochemistry · 2019
    Review
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 1 country.

Parthasarathy SampathkumarDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461, USA. psampath@aecom.yu.edu
Seung Joong Kim
Danalyn Manglicmot
Kevin T Bain
Jeremiah Gilmore
Tarun Gheyi
Jeremy Phillips
Ursula Pieper
Javier Fernandez-Martinez
Josef D Franke
Tsutomu Matsui
Hiro Tsuruta
Shane Atwell
Devon A Thompson
J Spencer Emtage
Stephen R Wasserman
Michael P Rout
Andrej Sali
J Michael Sauder
Steven C Almo
Stephen K Burley
Eli Lilly (United States) · USRockefeller University · USQB3 · USUniversity of California, San Francisco · USAlbert Einstein College of Medicine · USArgonne National Laboratory · USSLAC National Accelerator Laboratory · USStanford Synchrotron Radiation Lightsource · US

Funding

SUBPROJECT 5U54GM074945 · NIGMS · SGX PHARMACEUTICALS, INC. · PI BURLEY, STEPHEN KEVIN · 2005 to 2009
$46.2M
ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
The NYSGRC: A Large Scale Center for PSI:BiologyU54GM094662 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI FISER, ANDRAS · 2010 to 2014
$32.6M
NEW TOOLS FOR EXPLORING THE DYNAMIC INTERACTOME(RMI)U54RR022220 · NCRR · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2005 to 2011
$19.3M
New Tools for Exploring the Dynamic Interactome (Renewal)U54GM103511 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2012 to 2013
$6.2M
IMP: Software for Hybrid Determination of Macromolecular Assembly StructuresR01GM083960 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2008 to 2024
$5.2M
Nucleocytoplasmic transport: a target for cellular controlU01GM098256 · NIGMS · ROCKEFELLER UNIVERSITY · PI AITCHISON, JOHN D., ROUT, MICHAEL P · 2011 to 2014
$3.0M
DISSECTING THE MOLECULAR MACHINERY OF NUCLEAR TRANSPORTR01GM062427 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2001 to 2010
$2.7M
NCRR NIH HHS P41 RR001209NCRR NIH HHS P41RR001209NCRR NIH HHS U54 RR022220NIGMS NIH HHS R01 GM062427NIGMS NIH HHS R01 GM083960NIGMS NIH HHS U01 GM098256NIGMS NIH HHS U54 GM074945NIGMS NIH HHS U54 GM094662NIGMS NIH HHS U54 GM103511
6 · The paper itself

Abstract

The nuclear pore complex (NPC), embedded in the nuclear envelope, is a large, dynamic molecular assembly that facilitates exchange of macromolecules between the nucleus and the cytoplasm. The yeast NPC is an eightfold symmetric annular structure composed of ~456 polypeptide chains contributed by ~30 distinct proteins termed nucleoporins. Nup116, identified only in fungi, plays a central role in both protein import and mRNA export through the NPC. Nup116 is a modular protein with N-terminal "FG" repeats containing a Gle2p-binding sequence motif and a NPC targeting domain at its C-terminus. We report the crystal structure of the NPC targeting domain of Candida glabrata Nup116, consisting of residues 882-1034 [CgNup116(882-1034)], at 1.94 Å resolution. The X-ray structure of CgNup116(882-1034) is consistent with the molecular envelope determined in solution by small-angle X-ray scattering. Structural similarities of CgNup116(882-1034) with homologous domains from Saccharomyces cerevisiae Nup116, S. cerevisiae Nup145N, and human Nup98 are discussed.

Indexed as

Sequence Homology, Amino AcidAmino Acid SequenceCandida glabrataCrystallography, X-RayFungal ProteinsHumansMolecular Sequence DataMultiprotein ComplexesNuclear EnvelopeNuclear PoreNuclear Pore Complex ProteinsProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsFungal ProteinsMultiprotein ComplexesNuclear Pore Complex ProteinsNUP116 protein, S cerevisiaeNup98 protein, humanSaccharomyces cerevisiae Proteins

Identifiers

PMID22544723
PMCPMC3686472
OpenAlexW2038278011

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.