ArticleNucleic acids research2012
Improvements in the Protein Identifier Cross-Reference service.
Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
18 citing papers in PubMed.
- Dataset reporting 4654 cow milk proteins listed according to lactation stages and milk fractions.Data in brief · 2020Article
- Milk proteome from in silico data aggregation allows the identification of putative biomarkers of negative energy balance in dairy cows.Scientific reports · 2019Article
- Developments in toxicogenomics: understanding and predicting compound-induced toxicity from gene expression data.Molecular omics · 2018Review
- Protein Bioinformatics Databases and Resources.Methods in molecular biology (Clifton, N.J.) · 2017Review
- Differential protein expression and basal lamina remodeling in human heart failure.Proteomics. Clinical applications · 2016Article
- Comparative proteomics reveals human pluripotent stem cell-derived limbal epithelial stem cells are similar to native ocular surface epithelial cells.Scientific reports · 2015Article
- SPARQL-enabled identifier conversion with Identifiers.org.Bioinformatics (Oxford, England) · 2015Article
- Targets of drugs are generally, and targets of drugs having side effects are specifically good spreaders of human interactome perturbations.Scientific reports · 2015Article
- ProteomeScout: a repository and analysis resource for post-translational modifications and proteins.Nucleic acids research · 2015Article
- ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis.Nucleic acids research · 2015Article
- Anatomo-proteomic characterization of human basal ganglia: focus on striatum and globus pallidus.Molecular brain · 2014Article
- In-depth characterization of the cerebrospinal fluid (CSF) proteome displayed through the CSF proteome resource (CSF-PR).Molecular & cellular proteomics : MCP · 2014Article
- TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model.Nucleic acids research · 2014Article
- Bioinformatic analysis of proteomics data.BMC systems biology · 2014Review
- Comparing the Chemical Structure and Protein Content of ChEMBL, DrugBank, Human Metabolome Database and the Therapeutic Target Database.Molecular informatics · 2013Article
- Pclust: protein network visualization highlighting experimental data.Bioinformatics (Oxford, England) · 2013Article
- The state of the human proteome in 2012 as viewed through PeptideAtlas.Journal of proteome research · 2013Article
- The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013.Nucleic acids research · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
The Protein Identifier Cross-Reference (PICR) service is a tool that allows users to map protein identifiers, protein sequences and gene identifiers across over 100 different source databases. PICR takes input through an interactive website as well as Representational State Transfer (REST) and Simple Object Access Protocol (SOAP) services. It returns the results as HTML pages, XLS and CSV files. It has been in production since 2007 and has been recently enhanced to add new functionality and increase the number of databases it covers. Protein subsequences can be Basic Local Alignment Search Tool (BLAST) against the UniProt Knowledgebase (UniProtKB) to provide an entry point to the standard PICR mapping algorithm. In addition, gene identifiers from UniProtKB and Ensembl can now be submitted as input or mapped to as output from PICR. We have also implemented a 'best-guess' mapping algorithm for UniProt. In this article, we describe the usefulness of PICR, how these changes have been implemented, and the corresponding additions to the web services. Finally, we explain that the number of source databases covered by PICR has increased from the initial 73 to the current 102. New resources include several new species-specific Ensembl databases as well as the Ensembl Genome ones. PICR can be accessed at http://www.ebi.ac.uk/Tools/picr/.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.