Evidence map›Paper›PMID 22544318›Full record

ArticleCell cycle (Georgetown, Tex.)2012

Epigenetic inactivation of the tumor suppressor BIN1 drives proliferation of SNF5-deficient tumors.

Elizabeth S McKenna, Pablo Tamayo, Yoon-Jae Cho, Erik J Tillman, E Lorena Mora-Blanco, Courtney G Sansam, Edward C Koellhoffer, Scott L Pomeroy, Charles W M Roberts

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. BIN1 in cancer: biomarker and therapeutic target.Journal of cancer research and clinical oncology · 2023
    Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Indoleamine 2,3-Dioxygenase and Its Therapeutic Inhibition in Cancer.International review of cell and molecular biology · 2018
    Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Durable tumor regression in genetically altered malignant rhabdoid tumors by inhibition of methyltransferase EZH2.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Elizabeth S McKennaDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA USA.
Pablo Tamayo
Yoon-Jae Cho
Erik J Tillman
E Lorena Mora-Blanco
Courtney G Sansam
Edward C Koellhoffer
Scott L Pomeroy
Charles W M Roberts
Boston Children's Hospital · USChildren's Hospital · TNPalmetto Hematology Oncology · USBroad Institute · USDana-Farber Cancer Institute · USHarvard University · US

Funding

SYNAPTIC MECHANISMS IN HIPPOCAMPAL EPILEPTOGENESISP30HD018655 · NICHD · CHILDREN'S HOSPITAL BOSTON · PI POMEROY, SCOTT LOREN · 1985 to 2015
$26.2M
THE FUNCTION OF SNF5 (SMARCB1), AN EPIGENETIC TUMOR SUPPRESSORR01CA113794 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 2005 to 2026
$7.8M
GENOMIC ANALYSIS OF MEDULLOBLASTOMASR01CA109467 · NCI · CHILDREN'S HOSPITAL BOSTON · PI MESIROV, JILL P., POMEROY, SCOTT LOREN · 2004 to 2015
$7.3M
Knowledge-based Gene Expression Analysis for Biomedical and Cancer ResearchR01CA121941 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MESIROV, JILL P. · 2006 to 2016
$5.1M
NCI NIH HHS R01 CA109467NCI NIH HHS R01 CA113794NCI NIH HHS R01CA113794NCI NIH HHS R01 CA121941NICHD NIH HHS P30 HD018655
6 · The paper itself

Abstract

Emerging evidence demonstrates that subunits of the SWI/SNF chromatin remodeling complex are specifically mutated at high frequency in a variety of human cancer types. SNF5 (SMARCB1/INI1/BAF47), a core subunit of the SWI/SNF complex, is inactivated in the vast majority of rhabdoid tumors (RT), an aggressive type of pediatric cancer. SNF5-deficient cancers are diploid and genomically stable, suggesting that epigenetically based changes in transcription are key drivers of tumor formation caused by SNF5 loss. However, there is limited understanding of the target genes that drive cancer formation following SNF5 loss. Here we performed comparative expression analyses upon three independent SNF5-deficient cancer data sets from both human and mouse and identify downregulation of the BIN1 tumor suppressor as a conserved event in primary SNF5-deficient cancers. We show that SNF5 recruits the SWI/SNF complex to the BIN1 promoter, and that the marked reduction of BIN1 expression in RT correlates with decreased SWI/SNF occupancy. Functionally, we demonstrate that re-expression of BIN1 specifically compromises the proliferation of SNF5-deficient RT cell lines. Identification of BIN1 as a SNF5 target gene reveals a novel tumor suppressive regulatory mechanism whose disruption can drive cancer formation.

Indexed as

Epigenesis, GeneticAdaptor Proteins, Signal TransducingAnimalsCell ProliferationChromatin ImmunoprecipitationChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDown-RegulationHumansMiceNuclear ProteinsPromoter Regions, GeneticRhabdoid TumorRNA SplicingSMARCB1 ProteinTranscription FactorsAdaptor Proteins, Signal TransducingBIN1 protein, humanChromosomal Proteins, Non-HistoneDNA-Binding ProteinsNuclear ProteinsSMARCB1 ProteinSMARCB1 protein, humanSWI-SNF-B chromatin-remodeling complexTranscription FactorsTumor Suppressor Proteins

Identifiers

PMID22544318
PMCPMC3359122
OpenAlexW1988501767

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.