Evidence map›Paper›PMID 22543349›Full record

ArticleNature methods2012

An optimized two-finger archive for ZFN-mediated gene targeting.

Ankit Gupta, Ryan G Christensen, Amy L Rayla, Abirami Lakshmanan, Gary D Stormo, Scot A Wolfe

Abstract read
In one paragraph

Article in Nature methods, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
8.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 120 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
  6. Article
  7. Genome Editing and Diabetic Cardiomyopathy.Advances in experimental medicine and biology · 2023
    Article
  8. Review
  9. Review
  10. Review
  11. The application of genome editing technology in fish.Marine life science & technology · 2021
    Review
  12. Article
  13. Article
  14. Review
  15. Innovative approaches to genome editing in avian species.Journal of animal science and biotechnology · 2018
    Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ankit GuptaProgram in Gene Function and Expression, University of Massachusetts Medical School, Worcester, USA.
Ryan G Christensen
Amy L Rayla
Abirami Lakshmanan
Gary D Stormo
Scot A Wolfe
University of Massachusetts Chan Medical School · USWashington University in St. Louis · US

Funding

DNA PATTERN IDENTIFICATION AND ANALYSISR01HG000249 · NHGRI · WASHINGTON UNIVERSITY · PI STORMO, GARY D · 1990 to 2017
$5.6M
Using zinc finger nucleases to manipulate the zebrafish genomeR01HL093766 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LAWSON, NATHAN D, WOLFE, SCOT A · 2008 to 2017
$4.1M
Dimeric Cys2His2 Zinc Finger Proteins for Gene TargetingR01GM068110 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WOLFE, SCOT A · 2004 to 2013
$2.7M
DNA-binding specificities of Cys2His2 zinc fingersR24GM078369 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI JOUNG, J. KEITH · 2007 to 2010
$1.5M
NHGRI NIH HHS R01 HG000249NHGRI NIH HHS R01HG00249NHLBI NIH HHS R01 HL093766NHLBI NIH HHS R01HL093766NIGMS NIH HHS R01 GM068110NIGMS NIH HHS R01GM068110NIGMS NIH HHS R24 GM078369NIGMS NIH HHS R24GM078369
6 · The paper itself

Abstract

The widespread use of zinc-finger nucleases (ZFNs) for genome engineering is hampered by the fact that only a subset of sequences can be efficiently recognized using published finger archives. We describe a set of validated two-finger modules that complement existing finger archives and expand the range of ZFN-accessible sequences threefold. Using this archive, we introduced lesions at 9 of 11 target sites in the zebrafish genome.

Indexed as

AnimalsCatalytic DomainDNA Breaks, Double-StrandedEndodeoxyribonucleasesGene TargetingZebrafishZinc FingersEndodeoxyribonucleases

Identifiers

PMID22543349
PMCPMC3443678
OpenAlexW2044550252

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.