Evidence map›Paper›PMID 22542103›Full record

ArticleCurrent biology : CB2012

Origin of immunoglobulin isotype switching.

Catherine Zhu, Victor Lee, Alyssa Finn, Kate Senger, Ali A Zarrin, Louis Du Pasquier, Ellen Hsu

Abstract read
In one paragraph

Article in Current biology : CB, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. The immunoglobulins of cartilaginous fishes.Developmental and comparative immunology · 2021
    Review
  7. Article
  8. Article
  9. Current insights into the mechanism of mammalian immunoglobulin class switch recombination.Critical reviews in biochemistry and molecular biology · 2019
    Review
  10. Review
  11. Article
  12. A cold-blooded view of adaptive immunity.Nature reviews. Immunology · 2018
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Fish Immunoglobulins.Biology · 2016
    Review
  18. Emergence and Evolution of Secondary Lymphoid Organs.Annual review of cell and developmental biology · 2016
    Review
  19. Assembly and Expression of Shark Ig Genes.Journal of immunology (Baltimore, Md. : 1950) · 2016
    Review
  20. Biased Immunoglobulin Light Chain Gene Usage in the Shark.Journal of immunology (Baltimore, Md. : 1950) · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Catherine ZhuDepartment of Physiology and Pharmacology, State University of New York Health Science Center at Brooklyn, Brooklyn, NY 11203, USA.
Victor Lee
Alyssa Finn
Kate Senger
Ali A Zarrin
Louis Du Pasquier
Ellen Hsu

Funding

Isotype Exclusion and Hypermutation in the Nurse SharkR01GM068095 · NIGMS · SUNY DOWNSTATE MEDICAL CENTER · PI HSU, ELLEN · 2004 to 2017
$3.1M
NIGMS NIH HHS GM068095NIGMS NIH HHS R01 GM068095
6 · The paper itself

Abstract

backgroundFrom humans to frogs, immunoglobulin class switching introduces different effector functions to antibodies through an intrachromosomal DNA recombination process at the heavy-chain locus. Although there are two conventional antibody classes (IgM, IgW) in sharks, their heavy chains are encoded by 20 to >100 miniloci. These representatives of the earliest jawed vertebrates possess a primordial immunoglobulin gene organization where each gene cluster is autonomous and contains a few rearranging gene segments (VH-D1-D2-JH) with one constant region, μ or ω.

resultsV(D)J rearrangement always takes place within the μ cluster, but here we show that the VDJ can be expressed with constant regions from different clusters, although IgH genes are spatially distant, at >120 kb. Moreover, reciprocal exchanges take place between Igω and Igμ genes. Switching is augmented with deliberate immunization and is concomitant with somatic hypermutation activity. Because switching occurs independently of the partners' linkage position, some events involve transchromosomal recombination. The switch sites consist of direct joins between two genes in the 3' intron flanking JH.

conclusionsOur data are consistent with a mechanism of cutting or joining of distal DNA lesions initiated by activation-induced cytidine deaminase (AID), in the absence of mammalian-type switch regions. We suggest that, in shark, with its many autonomous IgH targeted by programmed DNA breakage, factors predisposing broken DNA ends to translocate configured the earliest version of class switch recombination.

Indexed as

Immunoglobulin Class SwitchingV(D)J RecombinationAnimalsBase SequenceImmunoblottingImmunoglobulin Heavy ChainsImmunoglobulin IsotypesImmunoglobulin MMolecular Sequence DataReverse Transcriptase Polymerase Chain ReactionSharksImmunoglobulin Heavy ChainsImmunoglobulin IsotypesImmunoglobulin M

Identifiers

PMID22542103
PMCPMC3360817

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.