Evidence map›Paper›PMID 22541732›Full record

ReviewTrends in genetics : TIG2012

Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts.

Marco Magistri, Mohammad Ali Faghihi, Georges St Laurent, Claes Wahlestedt

Open access · greenAbstract readReview
In one paragraph

Review in Trends in genetics : TIG, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 152 papers.

0numbers the graph read from it
0cells of the map it votes in
152citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

152 citing papers in PubMed, 293 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Antisense lncRNAFrontiers in molecular biosciences · 2023
    Article
  13. Article
  14. LINC00668 promoted non-small lung cancer progression by miR-518c-3p/TRIP4 axis.Cancer biomarkers : section A of Disease markers · 2023
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article

92 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Marco MagistriDepartment of Psychiatry and Behavioral Sciences, and Center for Therapeutic Innovation, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
Mohammad Ali Faghihi
Georges St Laurent
Claes Wahlestedt
University of Miami · USSt. Laurent Institute · US

Funding

Comprehensive analysis of the FMR1 locus transcriptional landscapeR01MH084880 · NIMH · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI WAHLESTEDT, CLAES ROBERT · 2010 to 2014
$2.0M
Role of noncoding RNAs in schizophreniaR01MH083733 · NIMH · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI WAHLESTEDT, CLAES ROBERT · 2008 to 2012
$2.0M
Regulatory RNAs as mediators and biomarkers in Alzheimer's DiseaseR01NS063974 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI WAHLESTEDT, CLAES ROBERT · 2009 to 2012
$1.6M
Noncoding RNAs as epigenomic modulators in Alzheimer's DiseaseRC2AG036596 · NIA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI WAHLESTEDT, CLAES ROBERT · 2009 to 2010
$915k
RNAi strategy for prolonged inhibition of BACE1: Role for noncoding RNAR21AG029290 · NIA · SCRIPPS RESEARCH INSTITUTE, THE · PI WAHLESTEDT, CLAES ROBERT · 2007 to 2008
$401k
NIA NIH HHS R21 AG029290NIA NIH HHS RC2 AG036596NIMH NIH HHS 5R01MH084880NIMH NIH HHS R01 MH083733NIMH NIH HHS R01 MH084880NINDS NIH HHS 5R01NS063974NINDS NIH HHS R01 NS063974
6 · The paper itself

Abstract

In the decade following the publication of the Human Genome, noncoding RNAs (ncRNAs) have reshaped our understanding of the broad landscape of genome regulation. During this period, natural antisense transcripts (NATs), which are transcribed from the opposite strand of either protein or non-protein coding genes, have vaulted to prominence. Recent findings have shown that NATs can exert their regulatory functions by acting as epigenetic regulators of gene expression and chromatin remodeling. Here, we review recent work on the mechanisms of epigenetic modifications by NATs and their emerging role as master regulators of chromatin states. Unlike other long ncRNAs, antisense RNAs usually regulate their counterpart sense mRNA in cis by bridging epigenetic effectors and regulatory complexes at specific genomic loci. Understanding the broad range of effects of NATs will shed light on the complex mechanisms that regulate chromatin remodeling and gene expression in development and disease.

Indexed as

Transcription, GeneticAnimalsChromatinEpigenesis, GeneticHumansRNA, AntisenseRNA, UntranslatedChromatinRNA, AntisenseRNA, Untranslated

Identifiers

PMID22541732
PMCPMC3768148
OpenAlexW2171975260

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.