Evidence map›Paper›PMID 22541042›Full record

ArticleBMC evolutionary biology2012

Cooperative interactions in the West Nile virus mutant swarm.

Alexander T Ciota, Dylan J Ehrbar, Greta A Van Slyke, Graham G Willsey, Laura D Kramer

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 66 citations in OpenAlex.

  1. Review
  2. Article
  3. Quasispecies productivity.Die Naturwissenschaften · 2024
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  8. Antigenic characterization of influenza and SARS-CoV-2 viruses.Analytical and bioanalytical chemistry · 2022
    Review
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  14. Coronavirus hemagglutinin-esterase and spike proteins coevolve for functional balance and optimal virion avidity.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Article
  16. Article
  17. Viral quasispecies.PLoS genetics · 2019
    Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Alexander T CiotaNew York State Department of Health, Wadsworth Center, Slingerlands, NY, USA.
Dylan J Ehrbar
Greta A Van Slyke
Graham G Willsey
Laura D Kramer
New York State Department of Health · USWadsworth Center · USAlbany State University · US

Funding

Genetic determinants of adaptation of two flavivirusesR01AI077669 · NIAID · WADSWORTH CENTER · PI KRAMER, LAURA D · 2009 to 2013
$1.8M
NIAID NIH HHS R01-AI-077669
6 · The paper itself

Abstract

backgroundRNA viruses including arthropod-borne viruses (arboviruses) exist as highly genetically diverse mutant swarms within individual hosts. A more complete understanding of the phenotypic correlates of these diverse swarms is needed in order to equate RNA swarm breadth and composition to specific adaptive and evolutionary outcomes.

resultsHere, we determined clonal fitness landscapes of mosquito cell-adapted West Nile virus (WNV) and assessed how altering the capacity for interactions among variants affects mutant swarm dynamics and swarm fitness. Our results demonstrate that although there is significant mutational robustness in the WNV swarm, genetic diversity also corresponds to substantial phenotypic diversity in terms of relative fitness in vitro. In addition, our data demonstrate that increasing levels of co-infection can lead to widespread strain complementation, which acts to maintain high levels of phenotypic and genetic diversity and potentially slow selection for individual variants. Lastly, we show that cooperative interactions may lead to swarm fitness levels which exceed the relative fitness levels of any individual genotype.

conclusionsThese studies demonstrate the profound effects variant interactions can have on arbovirus evolution and adaptation, and provide a baseline by which to study the impact of this phenomenon in natural systems.

Indexed as

Evolution, MolecularGenetic FitnessAnimalsCells, CulturedCloning, MolecularCoinfectionCulexDNA, ViralGenetic VariationGenotypeMolecular Sequence DataPhenotypeSequence Analysis, DNAWest Nile virusDNA, Viral

Identifiers

PMID22541042
PMCPMC3358237
OpenAlexW2133554652

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.