Evidence map›Paper›PMID 22536455›Full record

ArticlePloS one2012

The DNA glycosylases Ogg1 and Nth1 do not contribute to Ig class switching in activated mouse splenic B cells.

Anna J Ucher, Erin K Linehan, George W Teebor, Carol E Schrader, Janet Stavnezer

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Anna J UcherDepartment of Microbiology and Physiological Systems, Medical School, University of Massachusetts, Worcester, Massachusetts, United States of America.
Erin K Linehan
George W Teebor
Carol E Schrader
Janet Stavnezer
University of Massachusetts Chan Medical School · USColumbia University Irving Medical Center · US

Funding

MOLECULAR BASIS OF IMMUNOGLOBULIN HEAVY CHAIN SWITCHR01AI023283 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHRADER, CAROL E · 1985 to 2014
$5.8M
c-myc DNA breaks and c-myc-IgH locus translocations: roles of AID and oxidationR21AI088578 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI STAVNEZER, JANET M. · 2010 to 2011
$450k
NIAID NIH HHS AI-R21-088578NIAID NIH HHS AI-RO1-023283
6 · The paper itself

Abstract

During activation of B cells to undergo class switching, B cell metabolism is increased, and levels of reactive oxygen species (ROS) are increased. ROS can oxidize DNA bases resulting in substrates for the DNA glycosylases Ogg1 and Nth1. Ogg1 and Nth1 excise oxidized bases, and nick the resulting abasic sites, forming single-strand DNA breaks (SSBs) as intermediates during the repair process. In this study, we asked whether splenic B cells from mice deficient in these two enzymes would show altered class switching and decreased DNA breaks in comparison with wild-type mice. As the c-myc gene frequently recombines with the IgH S region in B cells induced to undergo class switching, we also analyzed the effect of deletion of these two glycosylases on DSBs in the c-myc gene. We did not detect a reduction in S region or c-myc DSBs or in class switching in splenic B cells from Ogg1- or Nth1-deficient mice or from mice deficient in both enzymes.

Indexed as

Immunoglobulin Class SwitchingAnimalsB-LymphocytesCell ProliferationCells, CulturedDeoxyribonuclease (Pyrimidine Dimer)DNA Breaks, Double-StrandedDNA GlycosylasesGene Knockout TechniquesGenes, mycImmunoglobulin Heavy ChainsMiceMice, Inbred C57BLMice, KnockoutReal-Time Polymerase Chain ReactionRecombination, GeneticDeoxyribonuclease (Pyrimidine Dimer)DNA GlycosylasesImmunoglobulin Heavy ChainsNthl1 protein, mouseOgg1 protein, mouse

Identifiers

PMID22536455
PMCPMC3334981
OpenAlexW1983602725

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.