Evidence map›Paper›PMID 22536453›Full record

ArticlePloS one2012

Lineages, sub-lineages and variants of enterovirus 68 in recent outbreaks.

Ina L Lauinger, Jon M Bible, Eugene P Halligan, Emma J Aarons, Eithne MacMahon, Cheuk Y W Tong

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Frequent detection of enterovirus D68 and rhinovirus type C in children with acute respiratory infections.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2021
    Article
  4. Acute Flaccid Myelitis: Current Status and Diagnostic Challenges.Journal of clinical neurology (Seoul, Korea) · 2020
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Enterovirus D68 and Human Respiratory Infections.Seminars in respiratory and critical care medicine · 2016
    Review
  10. Article
  11. Enterovirus D68 receptor requirements unveiled by haploid genetics.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Detection of enterovirus D68 in Canadian laboratories.Journal of clinical microbiology · 2015
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ina L LauingerDepartment of Infectious Diseases, School of Medicine, King's College London, London, United Kingdom.
Jon M Bible
Eugene P Halligan
Emma J Aarons
Eithne MacMahon
Cheuk Y W Tong

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enterovirus 68 (EV68) was first isolated in 1962. Very few cases of EV68 infection were described over the ensuing 40 years. However, in the past few years, an increase in severe respiratory tract infections associated with EV68 has been reported. We identified two clusters of EV68 infection in South London, UK, one each in the autumn/winters of 2009 and 2010. Sequence comparison showed significant homology of the UK strains with those from other countries including the Netherlands, Japan and the Philippines, which reported EV68 outbreaks between 2008 and 2010. Phylogenetic analysis of all available VP1 sequences indicated the presence of two modern EV68 lineages. The 2010 UK strains belonged to lineage 2. Lineage 1 could be further divided into two sub-lineages: some Japanese and Dutch strains collected between 2004 and 2010 form a distinct sub-lineages (sub-lineage 1.1), whereas other strains from the UK, Japan, Netherlands and Philippines collected between 2008 and 2010 represent sub-lineage 1.2. The UK 2009 strains together with several Dutch and Japanese strains from 2009/2010 represents one variant (1.2.1), whereas those from the Philippines a second variant (1.2.2). Based on specific deletions and substitutions, we suggest rules for the assignment of lineages and sub-lineages. Molecular epidemiological analysis indicates rapid recent evolution of EV68 and this may explain the recent findings of a global resurgence of EV68. Continuous global monitoring of the clinical and molecular epidemiology of EV68 is recommended.

Indexed as

Disease OutbreaksGenetic Variation5' Untranslated RegionsAdolescentAmino Acid SequenceBase SequenceCapsid ProteinsChildChild, PreschoolEnterovirus D, HumanEnterovirus InfectionsFemaleHumansMaleMolecular Sequence DataMolecular Typing5' Untranslated RegionsCapsid Proteins

Identifiers

PMID22536453
PMCPMC3335014

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.