Evidence map›Paper›PMID 22535962›Full record

ArticleThe Journal of biological chemistry2012

New class of HIV-1 integrase (IN) inhibitors with a dual mode of action.

Manuel Tsiang, Gregg S Jones, Anita Niedziela-Majka, Elaine Kan, Eric B Lansdon, Wayne Huang, Magdeleine Hung, Dharmaraj Samuel, Nikolai Novikov, Yili Xu and 6 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 159 citations in OpenAlex.

  1. Review
  2. Article
  3. Mapping the vRNA Interaction with HIV-1 Integrase.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
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  14. Review
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  20. Review

41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 1 institution in 1 country.

Manuel TsiangGilead Sciences, Inc, Foster City, California 94404, USA. mtsiang@gilead.com
Gregg S Jones
Anita Niedziela-Majka
Elaine Kan
Eric B Lansdon
Wayne Huang
Magdeleine Hung
Dharmaraj Samuel
Nikolai Novikov
Yili Xu
Michael Mitchell
Hongyan Guo
Kerim Babaoglu
Xiaohong Liu
Romas Geleziunas
Roman Sakowicz
Gilead Sciences (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

tert-Butoxy-(4-phenyl-quinolin-3-yl)-acetic acids (tBPQA) are a new class of HIV-1 integrase (IN) inhibitors that are structurally distinct from IN strand transfer inhibitors but analogous to LEDGINs. LEDGINs are a class of potent antiviral compounds that interacts with the lens epithelium-derived growth factor (LEDGF) binding pocket on IN and were identified through competition binding against LEDGF. LEDGF tethers IN to the host chromatin and enables targeted integration of viral DNA. The prevailing understanding of the antiviral mechanism of LEDGINs is that they inhibit LEDGF binding to IN, which prevents targeted integration of HIV-1. We showed that in addition to the properties already known for LEDGINs, the binding of tBPQAs to the IN dimer interface inhibits IN enzymatic activity in a LEDGF-independent manner. Using the analysis of two long terminal repeat junctions in HIV-infected cells, we showed that the inhibition by tBPQAs occurs at or prior to the viral DNA 3'-processing step. Biochemical studies revealed that this inhibition operates by compound-induced conformational changes in the IN dimer that prevent proper assembly of IN onto viral DNA. For the first time, tBPQAs were demonstrated to be allosteric inhibitors of HIV-1 IN displaying a dual mode of action: inhibition of IN-viral DNA assembly and inhibition of IN-LEDGF interaction.

Indexed as

AcetatesAdaptor Proteins, Signal TransducingCell LineChromatinDNA, ViralHIV-1HIV InfectionsHIV IntegraseHIV Integrase InhibitorsHumansQuinolinesTranscription FactorsVirus IntegrationAcetatesAdaptor Proteins, Signal TransducingChromatinDNA, ViralHIV IntegraseHIV Integrase InhibitorsPSIP1 protein, humanQuinolinesTranscription Factors

Identifiers

PMID22535962
PMCPMC3375541
OpenAlexW2059772834

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.