Evidence map›Paper›PMID 22534611›Full record

ArticleThe ISME journal2012

A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters.

Joseph J Grzymski, Christian S Riesenfeld, Timothy J Williams, Alex M Dussaq, Hugh Ducklow, Matthew Erickson, Ricardo Cavicchioli, Alison E Murray

Abstract read
In one paragraph

Article in The ISME journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

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  16. Genomic study and lipidomic bioassay ofFrontiers in microbiology · 2022
    Article
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2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Joseph J GrzymskiDivision of Earth and Ecosystem Sciences, Desert Research Institute, Reno, NV 89512, USA. joeg@dri.edu
Christian S Riesenfeld
Timothy J Williams
Alex M Dussaq
Hugh Ducklow
Matthew Erickson
Ricardo Cavicchioli
Alison E Murray

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antarctic surface oceans are well-studied during summer when irradiance levels are high, sea ice is melting and primary productivity is at a maximum. Coincident with this timing, the bacterioplankton respond with significant increases in secondary productivity. Little is known about bacterioplankton in winter when darkness and sea-ice cover inhibit photoautotrophic primary production. We report here an environmental genomic and small subunit ribosomal RNA (SSU rRNA) analysis of winter and summer Antarctic Peninsula coastal seawater bacterioplankton. Intense inter-seasonal differences were reflected through shifts in community composition and functional capacities encoded in winter and summer environmental genomes with significantly higher phylogenetic and functional diversity in winter. In general, inferred metabolisms of summer bacterioplankton were characterized by chemoheterotrophy, photoheterotrophy and aerobic anoxygenic photosynthesis while the winter community included the capacity for bacterial and archaeal chemolithoautotrophy. Chemolithoautotrophic pathways were dominant in winter and were similar to those recently reported in global 'dark ocean' mesopelagic waters. If chemolithoautotrophy is widespread in the Southern Ocean in winter, this process may be a previously unaccounted carbon sink and may help account for the unexplained anomalies in surface inorganic nitrogen content.

Indexed as

MetagenomicsSeasonsAntarctic RegionsArchaeaAutotrophic ProcessesBacteriaDNA, ArchaealDNA, BacterialGene LibraryHeterotrophic ProcessesPhylogenyPlanktonRNA, RibosomalSeawaterSequence Analysis, DNADNA, ArchaealDNA, BacterialRNA, Ribosomal

Identifiers

PMID22534611
PMCPMC3446801

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.