Evidence map›Paper›PMID 22534482›Full record

ArticleBrain research2012

Patterned expression of ion channel genes in mouse dorsal raphe nucleus determined with the Allen Mouse Brain Atlas.

J Scott Templin, Sun Jung Bang, Mariano Soiza-Reilly, Charles B Berde, Kathryn G Commons

Abstract read
In one paragraph

Article in Brain research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Deletion of the P/Q-Type Calcium Channel from Serotonergic Neurons Drives Male Aggression in Mice.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2022
    Article
  2. Article
  3. Article
  4. Serotonergic modulation across sensory modalities.Journal of neurophysiology · 2020
    Review
  5. Article
  6. Article
  7. Depression-like behavior in rat: Involvement of galanin receptor subtype 1 in the ventral periaqueductal gray.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  8. Article
  9. Article
  10. Article
  11. Serotonergic neuron regulation informed by in vivo single-cell transcriptomics.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2014
    Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

J Scott TemplinDepartment of Anesthesiology, Perioperative, and Pain Medicine, Children's Hospital, Boston, 300 Longwood Ave., Boston, MA 02115, USA.
Sun Jung Bang
Mariano Soiza-Reilly
Charles B Berde
Kathryn G Commons
Harvard University · USBoston Children's Hospital · US

Funding

Topography of Serotonin DysfunctionR01DA021801 · NIDA · BOSTON CHILDREN'S HOSPITAL · PI COMMONS, KATHRYN G · 2007 to 2018
$3.6M
NIDA NIH HHS DA-021801NIDA NIH HHS R01 DA021801
6 · The paper itself

Abstract

The dorsal raphe nucleus (DR) is the major source of serotonin (5-hydroxytryptamine, 5-HT) in the forebrain and dysfunction of this midbrain structure is implicated in affective disorders. The DR is composed of several types of 5-HT and non-5-HT neurons and their excitable-membrane properties are heterogeneous and overlapping. In order to understand how these properties may be generated, we examined the mRNA expression patterns of voltage- and ligand-gated ion channels in the DR using the Allen Mouse Brain Atlas. Since DR cytoarchitecture is organized with respect to the midline, we sought to identify genes that were expressed in a pattern with respect to the midline, either enriched or depleted, rather than those that were homogenously expressed throughout the DR. Less than 10% of the screened genes for voltage-gated ion channels showed patterned expression within the DR. Identified genes included voltage-gated sodium channel beta subunits, potassium channels, P/Q-, N-type calcium channels, as well as the alpha2/delta-1 calcium channel. Several voltage-gated chloride channels were also identified, although these may function within intracellular compartments. Of the ligand-gated ion channels examined, 20% showed patterned expression. These consisted primarily of glutamate and GABA-A receptor subunits. The identified genes likely contribute to unique excitable properties of different groups of neurons in the DR and may include novel pharmacologic targets for affective disorders.

Indexed as

Brain MappingAnatomy, ArtisticAnimalsAtlases as TopicIon ChannelsMiceNeuronsRaphe NucleiReceptors, GABAReceptors, GlutamateRNA, MessengerIon ChannelsReceptors, GABAReceptors, GlutamateRNA, Messenger

Identifiers

PMID22534482
PMCPMC3606056
OpenAlexW2068706298

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.