Evidence map›Paper›PMID 22534017›Full record

ArticleRetrovirology2012

Proteomic analysis of HIV-1 Nef cellular binding partners reveals a role for exocyst complex proteins in mediating enhancement of intercellular nanotube formation.

Joya Mukerji, Kevin C Olivieri, Vikas Misra, Kristin A Agopian, Dana Gabuzda

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 1 synthesis or guideline pooled it, 86 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Tunneling Nanotubes: The Cables for Viral Spread and Beyond.Results and problems in cell differentiation · 2024
    Review
  8. A role for tunneling nanotubes in virus spread.Frontiers in microbiology · 2024
    Review
  9. Review
  10. Article
  11. Article
  12. HIV-1Biomolecules · 2022
    Article
  13. Review
  14. HIV-1Biology direct · 2021
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Joya MukerjiDepartment of Cancer Immunology and AIDS, Dana Farber Cancer Institute, Boston, MA, USA.
Kevin C Olivieri
Vikas Misra
Kristin A Agopian
Dana Gabuzda
Dana-Farber Cancer Institute · USHarvard University · US

Funding

Training in the Molecular Biology of Neurodegeneration and Alzheimer's DiseaseT32AG000222 · NIA · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Bruce A YANKNER · 1992 to 2026
$18.5M
Postdoctoral Training Program in AIDS-related ResearchT32AI007386 · NIAID · DANA-FARBER CANCER INSTITUTE · PI CANTOR, HARVEY, ENGELMAN, ALAN N. · 1990 to 2023
$5.3M
Systems Biology of Immune Reconstitution in HIV / AIDSDP1DA028994 · NIDA · DANA-FARBER CANCER INST · PI GABUZDA, DANA H. · 2009 to 2014
$4.3M
HIV Nef-MEDIATED ENHANCEMENT OF T CELL ACTIVATION VIA PAK2R21AI073415 · NIAID · DANA-FARBER CANCER INST · PI GABUZDA, DANA H. · 2007 to 2008
$466k
Regulation of T cell activation by HIV NefR21AI077464 · NIAID · DANA-FARBER CANCER INST · PI GABUZDA, DANA H. · 2008 to 2009
$299k
NIAID NIH HHS R21 AI073415NIAID NIH HHS R21 AI077464NIAID NIH HHS R21 AI73415NIAID NIH HHS R21 AI77464NIAID NIH HHS T32 AI007386NIA NIH HHS T32 AG00222NIDA NIH HHS DP1 DA028994
6 · The paper itself

Abstract

backgroundHIV-1 Nef protein contributes to pathogenesis via multiple functions that include enhancement of viral replication and infectivity, alteration of intracellular trafficking, and modulation of cellular signaling pathways. Nef stimulates formation of tunneling nanotubes and virological synapses, and is transferred to bystander cells via these intercellular contacts and secreted microvesicles. Nef associates with and activates Pak2, a kinase that regulates T-cell signaling and actin cytoskeleton dynamics, but how Nef promotes nanotube formation is unknown.

resultsTo identify Nef binding partners involved in Pak2-association dependent Nef functions, we employed tandem mass spectrometry analysis of Nef immunocomplexes from Jurkat cells expressing wild-type Nef or Nef mutants defective for the ability to associate with Pak2 (F85L, F89H, H191F and A72P, A75P in NL4-3). We report that wild-type, but not mutant Nef, was associated with 5 components of the exocyst complex (EXOC1, EXOC2, EXOC3, EXOC4, and EXOC6), an octameric complex that tethers vesicles at the plasma membrane, regulates polarized exocytosis, and recruits membranes and proteins required for nanotube formation. Additionally, Pak2 kinase was associated exclusively with wild-type Nef. Association of EXOC1, EXOC2, EXOC3, and EXOC4 with wild-type, but not mutant Nef, was verified by co-immunoprecipitation assays in Jurkat cells. Furthermore, shRNA-mediated depletion of EXOC2 in Jurkat cells abrogated Nef-mediated enhancement of nanotube formation. Using bioinformatic tools, we visualized protein interaction networks that reveal functional linkages between Nef, the exocyst complex, and the cellular endocytic and exocytic trafficking machinery.

conclusionsExocyst complex proteins are likely a key effector of Nef-mediated enhancement of nanotube formation, and possibly microvesicle secretion. Linkages revealed between Nef and the exocyst complex suggest a new paradigm of exocyst involvement in polarized targeting for intercellular transfer of viral proteins and viruses.

Indexed as

Cell LineHumansModels, BiologicalMutant Proteinsnef Gene Products, Human Immunodeficiency Virusp21-Activated KinasesProtein BindingProtein Interaction MappingProtein Interaction MapsProteomicsVesicular Transport ProteinsEXOC2 protein, humanMutant Proteinsnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1p21-Activated KinasesPAK2 protein, humanVesicular Transport Proteins

Identifiers

PMID22534017
PMCPMC3382630
OpenAlexW2126684705

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.