Evidence map›Paper›PMID 22532809›Full record

ArticlePLoS genetics2012

Long-range chromosome organization in E. coli: a site-specific system isolates the Ter macrodomain.

Axel Thiel, Michèle Valens, Isabelle Vallet-Gely, Olivier Espéli, Frédéric Boccard

Abstract read
In one paragraph

Article in PLoS genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Unstable chromosome rearrangements inProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Coevolution of the Organization and Structure of Prokaryotic Genomes.Cold Spring Harbor perspectives in biology · 2016
    Review
  16. Article
  17. Single-cell, real-time detection of oxidative stress induced in Escherichia coli by the antimicrobial peptide CM15.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  18. Bacterial chromosome organization and segregation.Annual review of cell and developmental biology · 2015
    Review
  19. Review
  20. Cell cycle regulation by the bacterial nucleoid.Current opinion in microbiology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Axel ThielCNRS, Centre de Génétique Moléculaire, UPR3404, Gif-sur-Yvette, France.
Michèle Valens
Isabelle Vallet-Gely
Olivier Espéli
Frédéric Boccard

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The organization of the Escherichia coli chromosome into a ring composed of four macrodomains and two less-structured regions influences the segregation of sister chromatids and the mobility of chromosomal DNA. The structuring of the terminus region (Ter) into a macrodomain relies on the interaction of the protein MatP with a 13-bp target called matS repeated 23 times in the 800-kb-long domain. Here, by using a new method that allows the transposition of any chromosomal segment at a defined position on the genetic map, we reveal a site-specific system that restricts to the Ter region a constraining process that reduces DNA mobility and delays loci segregation. Remarkably, the constraining process is regulated during the cell cycle and occurs only when the Ter MD is associated with the division machinery at mid-cell. The change of DNA properties does not rely on the presence of a trans-acting mechanism but rather involves a cis-effect acting at a long distance from the Ter region. Two specific 12-bp sequences located in the flanking Left and Right macrodomains and a newly identified protein designated YfbV conserved with MatP through evolution are required to impede the spreading of the constraining process to the rest of the chromosome. Our results unravel a site-specific system required to restrict to the Ter region the consequences of anchoring the Ter MD to the division machinery.

Indexed as

Cell DivisionInsulator ElementsCell CycleCell Cycle ProteinsChromosomal Proteins, Non-HistoneChromosomes, BacterialChromosome SegregationDNA-Binding ProteinsDNA ReplicationEscherichia coliEscherichia coli ProteinsMutagenesis, InsertionalReplication OriginSite-Specific DNA-Methyltransferase (Adenine-Specific)Transcription FactorsCell Cycle ProteinsChromosomal Proteins, Non-Histonedam protein, E coliDNA-Binding ProteinsEscherichia coli ProteinsMatP protein, E coliNsrR protein, E coliSite-Specific DNA-Methyltransferase (Adenine-Specific)Transcription FactorsZapB protein, E coli

Identifiers

PMID22532809
PMCPMC3330122

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.