Evidence map›Paper›PMID 22531831›Full record

ArticleJournal of biomedical informatics2012

A query integrator and manager for the query web.

James F Brinkley, Landon T Detwiler, Structural Informatics Group

Abstract read
In one paragraph

Article in Journal of biomedical informatics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. The ontology of craniofacial development and malformation for translational craniofacial research.American journal of medical genetics. Part C, Seminars in medical genetics · 2013
    Review
  6. A query integrator and manager for the query web.Journal of biomedical informatics · 2012
    Article
  7. Ontology-based federated data access to human studies information.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2012
    Article
  8. Ontology-based image navigation: exploring 3.0-T MR neurography of the brachial plexus using AIM and RadLex.Radiographics : a review publication of the Radiological Society of North America, Inc
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

James F BrinkleyDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA. brinkley@u.washington.edu
Landon T Detwiler
Structural Informatics Group

Funding

INSTITUTE FOR TRANSLATIONAL HEALTH SCIENCE (UL1): BPCAUL1RR025014 · NCRR · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2007 to 2011
$51.5M
IBIC: Integrated Brain Imaging Center for the University of WashingtonRC4NS073008 · NINDS · UNIVERSITY OF WASHINGTON · PI GRABOWSKI, THOMAS J. · 2010 to 2010
$4.8M
Realizing the potential of reference ontologies for the semantic webR01HL087706 · NHLBI · UNIVERSITY OF WASHINGTON · PI BRINKLEY, JAMES F · 2007 to 2010
$2.7M
Mechanisms of Tolerance to Renal Maternal MicrochimerismR01AR051545 · NIAMS · SEATTLE CHILDREN'S HOSPITAL · PI STEVENS, ANNE MARGUERITE · 2007 to 2011
$1.9M
Ontology-Based Integration of Human Studies DataR01RR026040 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SIM, IDA · 2009 to 2011
$1.5M
REGULATION OF VASCULAR TONE BY REGENERATED ENDOTHELIUMF32HL008770 · NHLBI · EMORY UNIVERSITY · PI ANDERSON, WILLIAM D · 1993 to 1995
–
NCI NIH HHS S10-CA029NCRR NIH HHS R01 RR026040NCRR NIH HHS RR025014NCRR NIH HHS RR026040NCRR NIH HHS UL1 RR025014NHLBI NIH HHS F32 HL008770NHLBI NIH HHS HL08770NHLBI NIH HHS R01 HL087706NIAMS NIH HHS AR051545NIAMS NIH HHS R01 AR051545NINDS NIH HHS NS073008NINDS NIH HHS RC4 NS073008
6 · The paper itself

Abstract

We introduce two concepts: the Query Web as a layer of interconnected queries over the document web and the semantic web, and a Query Web Integrator and Manager (QI) that enables the Query Web to evolve. QI permits users to write, save and reuse queries over any web accessible source, including other queries saved in other installations of QI. The saved queries may be in any language (e.g. SPARQL, XQuery); the only condition for interconnection is that the queries return their results in some form of XML. This condition allows queries to chain off each other, and to be written in whatever language is appropriate for the task. We illustrate the potential use of QI for several biomedical use cases, including ontology view generation using a combination of graph-based and logical approaches, value set generation for clinical data management, image annotation using terminology obtained from an ontology web service, ontology-driven brain imaging data integration, small-scale clinical data integration, and wider-scale clinical data integration. Such use cases illustrate the current range of applications of QI and lead us to speculate about the potential evolution from smaller groups of interconnected queries into a larger query network that layers over the document and semantic web. The resulting Query Web could greatly aid researchers and others who now have to manually navigate through multiple information sources in order to answer specific questions.

Indexed as

Database Management SystemsInternetSearch EngineBrainBrain MappingDatabases as TopicHumansModels, TheoreticalSemanticsUser-Computer Interface

Identifiers

PMID22531831
PMCPMC3408576

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.