Evidence map›Paper›PMID 22531117›Full record

ArticleMolecular systems biology2012

Asymmetric positive feedback loops reliably control biological responses.

Alexander V Ratushny, Ramsey A Saleem, Katherine Sitko, Stephen A Ramsey, John D Aitchison

Abstract read
In one paragraph

Article in Molecular systems biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Targeting the 5-HTActa pharmacologica Sinica · 2026
    Article
  2. Article
  3. Shared Mechanisms inPPAR research · 2024
    Article
  4. Review
  5. Differential gene regulatory networks in development and disease.Cellular and molecular life sciences : CMLS · 2018
    Review
  6. Article
  7. Article
  8. Signaling dynamics and peroxisomes.Current opinion in cell biology · 2015
    Review
  9. Systems cell biology.The Journal of cell biology · 2014
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Peroxisomes take shape.Nature reviews. Molecular cell biology · 2013
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alexander V RatushnyInstitute for Systems Biology, Seattle, WA, USA.
Ramsey A Saleem
Katherine Sitko
Stephen A Ramsey
John D Aitchison

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI OZINSKY, ADRIAN · 2006 to 2016
$30.6M
NEW TOOLS FOR EXPLORING THE DYNAMIC INTERACTOME(RMI)U54RR022220 · NCRR · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2005 to 2011
$19.3M
Oleate-responsive gene regulatory networks governing peroxisome proliferationR01GM075152 · NIGMS · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI AITCHISON, JOHN D. · 2008 to 2011
$1.9M
Systems analysis of transcriptional interactions underlying foam cell formationK25HL098807 · NHLBI · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI RAMSEY, STEPHEN A. · 2010 to 2013
$584k
NCRR NIH HHS U54-2U54RR022220NCRR NIH HHS U54 RR022220NHLBI NIH HHS K25 HL098807NIGMS NIH HHS P50 GM076547NIGMS NIH HHS P50-GM076547NIGMS NIH HHS R01 GM075152NIGMS NIH HHS R01-GM075152
6 · The paper itself

Abstract

Positive feedback is a common mechanism enabling biological systems to respond to stimuli in a switch-like manner. Such systems are often characterized by the requisite formation of a heterodimer where only one of the pair is subject to feedback. This ASymmetric Self-UpREgulation (ASSURE) motif is central to many biological systems, including cholesterol homeostasis (LXRα/RXRα), adipocyte differentiation (PPARγ/RXRα), development and differentiation (RAR/RXR), myogenesis (MyoD/E12) and cellular antiviral defense (IRF3/IRF7). To understand why this motif is so prevalent, we examined its properties in an evolutionarily conserved transcriptional regulatory network in yeast (Oaf1p/Pip2p). We demonstrate that the asymmetry in positive feedback confers a competitive advantage and allows the system to robustly increase its responsiveness while precisely tuning the response to a consistent level in the presence of varying stimuli. This study reveals evolutionary advantages for the ASSURE motif, and mechanisms for control, that are relevant to pharmacologic intervention and synthetic biology applications.

Indexed as

Feedback, PhysiologicalGene Expression Regulation, FungalModels, MolecularFlow CytometryGene Regulatory NetworksSaccharomyces cerevisiaeSignal TransductionSystems BiologyUp-Regulation

Identifiers

PMID22531117
PMCPMC3361002

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.