Evidence map›Paper›PMID 22529937›Full record

ArticlePloS one2012

RNA-seq analysis reveals that an ECF σ factor, AcsS, regulates achromobactin biosynthesis in Pseudomonas syringae pv. syringae B728a.

Jessica W Greenwald, Charles J Greenwald, Benjamin J Philmus, Tadhg P Begley, Dennis C Gross

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. The Pbo Cluster fromToxins · 2021
    Article
  3. A Breach in Plant Defences:International journal of molecular sciences · 2021
    Article
  4. Article
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  6. Signal transduction schemes inComputational and structural biotechnology journal · 2020
    Review
  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jessica W GreenwaldDepartment of Plant Pathology and Microbiology, Texas A&M University, College Station, Texas, United States of America.
Charles J Greenwald
Benjamin J Philmus
Tadhg P Begley
Dennis C Gross
Texas A&M University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Iron is an essential micronutrient for Pseudomonas syringae pv. syringae strain B728a and many other microorganisms; therefore, B728a has evolved methods of iron acquirement including the use of iron-chelating siderophores. In this study an extracytoplasmic function (ECF) sigma factor, AcsS, encoded within the achromobactin gene cluster is shown to be a major regulator of genes involved in the biosynthesis and secretion of this siderophore. However, production of achromobactin was not completely abrogated in the deletion mutant, implying that other regulators may be involved such as PvdS, the sigma factor that regulates pyoverdine biosynthesis. RNA-seq analysis identified 287 genes that are differentially expressed between the AcsS deletion mutant and the wild type strain. These genes are involved in iron response, secretion, extracellular polysaccharide production, and cell motility. Thus, the transcriptome analysis supports a role for AcsS in the regulation of achromobactin production and the potential activity of both AcsS and achromobactin in the plant-associated lifestyle of strain B728a.

Indexed as

Bacterial ToxinsBiological TransportCitratesEnvironmentGene Expression ProfilingGene Expression Regulation, BacterialGene LibraryGene OrderGenes, BacterialGenome, BacterialHigh-Throughput Nucleotide SequencingIronKetoglutaric AcidsMultigene FamilyPlant DiseasesPolysaccharides, BacterialachromobactinBacterial ToxinsCitratesexopolysaccharide, PseudomonasIronKetoglutaric AcidsPolysaccharides, BacterialSigma Factor

Identifiers

PMID22529937
PMCPMC3329529
OpenAlexW1980653761

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.