Evidence map›Paper›PMID 22529844›Full record

ArticleFrontiers in microbiology2012

Telmatocola sphagniphila gen. nov., sp. nov., a novel dendriform planctomycete from northern wetlands.

Irina S Kulichevskaya, Yulia M Serkebaeva, Yongkyu Kim, W Irene C Rijpstra, Jaap S Sinninghe Damsté, Werner Liesack, Svetlana N Dedysh

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In one paragraph

Article in Frontiers in microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  5. Microorganisms · 2022
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  9. International journal of systematic and evolutionary microbiology · 2020
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  10. The Microbiome ofFrontiers in microbiology · 2020
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  11. Article
  12. Genome Analysis of Fimbriiglobus ruber SP5Applied and environmental microbiology · 2018
    Article
  13. Tuwongella immobilis gen. nov., sp. nov., a novel non-motile bacterium within the phylum Planctomycetes.International journal of systematic and evolutionary microbiology · 2017
    Article
  14. Article
  15. Bacterial physiology: Life minus Z.Nature microbiology · 2016
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  16. Article
  17. High Diversity ofFrontiers in microbiology · 2016
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  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Irina S KulichevskayaS.N. Winogradsky Institute of Microbiology, Russian Academy of Sciences Moscow, Russia.
Yulia M Serkebaeva
Yongkyu Kim
W Irene C Rijpstra
Jaap S Sinninghe Damsté
Werner Liesack
Svetlana N Dedysh

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the phylum Planctomycetes are common inhabitants of northern wetlands. We used barcoded pyrosequencing to survey bacterial diversity in an acidic (pH 4.0) Sphagnum peat sampled from the peat bog Obukhovskoye, European North Russia. A total of 21189 bacterial 16S rRNA gene sequences were obtained, of which 1081 reads (5.1%) belonged to the Planctomycetes. Two-thirds of these sequences affiliated with planctomycete groups for which characterized representatives have not yet been available. Here, we describe two organisms from one of these previously uncultivated planctomycete groups. One isolate, strain OB3, was obtained from the peat sample used in our molecular study, while another strain, SP2(T) (=DSM 23888(T) = VKM B-2710(T)), was isolated from the peat bog Staroselsky moss. Both isolates are represented by aerobic, budding, pink-pigmented, non-motile, spherical cells that are arranged in unusual, dendriform-like structures during growth on solid media. These bacteria are moderately acidophilic and mesophilic, capable of growth at pH 4.0-7.0 (optimum pH 5.0-5.5) and at 6-30°C (optimum 20-26°C). The preferred growth substrates are various heteropolysaccharides and sugars, the latter being utilized only if provided in low concentrations (≤0.025%). In contrast to other described planctomycetes, strains SP2(T) and OB3 possess weak cellulolytic potential. The major fatty acids are C16:1ω5c, C18:1ω5c, C16:0, and C18:0. Characteristic lipids are the n-C31 polyunsaturated alkene (9-10 double bonds) and C30:1/C32:1 (ω-1) hydroxy fatty acids. The G + C content of the DNA is 58.5-59.0 mol%. Strains SP2(T) and OB3 share identical 16S rRNA gene sequences, which exhibit only 86 and 87% similarity to those of Gemmata obscuriglobus and Zavarzinella formosa. Based on the characteristics reported here, we propose to classify these novel planctomycetes as representatives of a novel genus and species, Telmatocola sphagniphila gen. nov., sp. nov.

Indexed as

acidic northern wetlandscellulolytic planctomycetedendriform cell morphologysp. nov.Telmatocola sphagniphila gen. nov.the phylum Planctomycetes

Identifiers

PMID22529844
PMCPMC3327967

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.