Evidence map›Paper›PMID 22529359›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

SINGLET OXYGEN RESISTANT 1 links reactive electrophile signaling to singlet oxygen acclimation in Chlamydomonas reinhardtii.

Beat B Fischer, Heidi K Ledford, Setsuko Wakao, ShihYau Grace Huang, David Casero, Matteo Pellegrini, Sabeeha S Merchant, Andreas Koller, Rik I L Eggen, Krishna K Niyogi

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Plant direct · 2023
    Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Characterization ofPlants (Basel, Switzerland) · 2021
    Article
  11. Review
  12. Molecular Mechanisms Underlying the Acclimation ofFrontiers in plant science · 2021
    Article
  13. Article
  14. Singlet Oxygen in Plants: Generation, Detection, and Signaling Roles.International journal of molecular sciences · 2020
    Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Beat B FischerDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA. beat.fischer@eawag.ch
Heidi K Ledford
Setsuko Wakao
ShihYau Grace Huang
David Casero
Matteo Pellegrini
Sabeeha S Merchant
Andreas Koller
Rik I L Eggen
Krishna K Niyogi
University of California, Berkeley · USUniversity of California, Los Angeles · USSwiss Federal Institute of Aquatic Science and Technology · CH

Funding

Singlet Oxygen SignalingR01GM071908 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI NIYOGI, KRISHNA K · 2004 to 2007
$1.0M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM071908NIGMS NIH HHS R01GM071908
6 · The paper itself

Abstract

Acclimation of Chlamydomonas reinhardtii cells to low levels of singlet oxygen, produced either by photoreactive chemicals or high light treatment, induces a specific genetic response that strongly increases the tolerance of the algae to subsequent exposure to normally lethal singlet oxygen-producing conditions. The genetic response includes the increased expression of various oxidative stress response and detoxification genes, like the glutathione peroxidase homologous gene GPXH/GPX5 and the σ-class glutathione-S-transferase gene GSTS1. To identify components involved in the signal transduction and activation of the singlet oxygen-mediated response, a mutant selection was performed. This selection led to the isolation of the singlet oxygen resistant 1 (sor1) mutant, which is more tolerant to singlet oxygen-producing chemicals and shows a constitutively higher expression of GPXH and GSTS1. Map-based cloning revealed that the SOR1 gene encodes a basic leucine zipper transcription factor, which controls its own expression and the expression of a large number of oxidative stress response and detoxification genes. In the promoter region of many of these genes, a highly conserved 8-bp palindromic sequence element was found to be enriched. This element was essential for GSTS1 induction by increased levels of lipophilic reactive electrophile species (RES), suggesting that it functions as an electrophile response element (ERE). Furthermore, GSTS1 overexpression in sor1 requires the ERE, although it is unknown whether it occurs through direct binding of SOR1 to the ERE. RES can be formed after singlet oxygen-induced lipid peroxidation, indicating that RES-stimulated and SOR1-mediated responses of detoxification genes are part of the singlet oxygen-induced acclimation process in C. reinhardtii.

Indexed as

AcclimatizationBase SequenceBasic-Leucine Zipper Transcription FactorsChlamydomonas reinhardtiiCloning, MolecularGenes, PlantGlutathione PeroxidaseMicroarray AnalysisMolecular Sequence DataOxidative StressPromoter Regions, GeneticReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionSequence Analysis, RNASignal TransductionSinglet OxygenBasic-Leucine Zipper Transcription FactorsGlutathione PeroxidaseSinglet Oxygen

Identifiers

PMID22529359
PMCPMC3356615
OpenAlexW2033263254

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.