Evidence map›Paper›PMID 22529269›Full record

ArticleThe Journal of experimental medicine2012

Artemis C-terminal region facilitates V(D)J recombination through its interactions with DNA Ligase IV and DNA-PKcs.

Shruti Malu, Pablo De Ioannes, Mikhail Kozlov, Marsha Greene, Dailia Francis, Mary Hanna, Jesse Pena, Carlos R Escalante, Aya Kurosawa, Hediye Erdjument-Bromage and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Structure and Function of SNM1 Family Nucleases.Advances in experimental medicine and biology · 2023
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
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  15. Article
  16. Structural evidence for an inThe Journal of biological chemistry · 2019
    Article
  17. Review
  18. Review
  19. Impact of DNA repair and stability defects on cortical development.Cellular and molecular life sciences : CMLS · 2018
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 4 countries.

Shruti MaluImmunology Institute, Mount Sinai School of Medicine, New York, NY 10029, USA.
Pablo De Ioannes
Mikhail Kozlov
Marsha Greene
Dailia Francis
Mary Hanna
Jesse Pena
Carlos R Escalante
Aya Kurosawa
Hediye Erdjument-Bromage
Paul Tempst
Noritaka Adachi
Paolo Vezzoni
Anna Villa
Aneel K Aggarwal
Patricia Cortes
Institute of Immunology · HRInstitute of Genetic and Biomedical Research · ITMemorial Sloan Kettering Cancer Center · USYokohama City University · JP

Funding

Regulation of IgA class switching in the intestinal mucosaP01AI061093 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI CUNNINGHAM-RUNDLES, CHARLOTTE · 2004 to 2021
$29.8M
THE ROLE OF IRF PROTEINS IN GENE TRANSCRIPTIONR01AI041706 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI AGGARWAL, ANEEL K. · 1998 to 2009
$2.2M
Regulation of V(D)J recombination by Rag2 C terminusR01AI070880 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CORTES, PATRICIA · 2010 to 2014
$1.6M
Mechanism and regulation of V(D)J repairR01AI080755 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CORTES, PATRICIA · 2009 to 2013
$1.6M
Artemis: Biochemical ,structural and functional analysisR01AI070532 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CORTES, PATRICIA · 2009 to 2010
$834k
Artemis: Biochemical, structural and functional analysisR56AI070532 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CORTES, PATRICIA · 2007 to 2007
$424k
NIAID NIH HHS P01 AI061093NIAID NIH HHS R01 AI041706NIAID NIH HHS R01 AI070532NIAID NIH HHS R01 AI070880NIAID NIH HHS R01 AI080755NIAID NIH HHS R01-AI41706NIAID NIH HHS R56 AI070532NIAID NIH HHS R56AI070532-01A1
6 · The paper itself

Abstract

Artemis is an endonuclease that opens coding hairpin ends during V(D)J recombination and has critical roles in postirradiation cell survival. A direct role for the C-terminal region of Artemis in V(D)J recombination has not been defined, despite the presence of immunodeficiency and lymphoma development in patients with deletions in this region. Here, we report that the Artemis C-terminal region directly interacts with the DNA-binding domain of Ligase IV, a DNA Ligase which plays essential roles in DNA repair and V(D)J recombination. The Artemis-Ligase IV interaction is specific and occurs independently of the presence of DNA and DNA-protein kinase catalytic subunit (DNA-PKcs), another protein known to interact with the Artemis C-terminal region. Point mutations in Artemis that disrupt its interaction with Ligase IV or DNA-PKcs reduce V(D)J recombination, and Artemis mutations that affect interactions with Ligase IV and DNA-PKcs show additive detrimental effects on coding joint formation. Signal joint formation remains unaffected. Our data reveal that the C-terminal region of Artemis influences V(D)J recombination through its interaction with both Ligase IV and DNA-PKcs.

Indexed as

Amino Acid SequenceBase SequenceDNA-Activated Protein KinaseDNA-Binding ProteinsDNA Ligase ATPDNA LigasesDNA PrimersDNA RepairEndonucleasesFluorescence PolarizationGenetic VectorsHeLa CellsHumansImmunoprecipitationMolecular Sequence DataNuclear ProteinsDCLRE1C protein, humanDNA-Activated Protein KinaseDNA-Binding ProteinsDNA Ligase ATPDNA LigasesDNA PrimersEndonucleasesLIG4 protein, humanNuclear ProteinsPRKDC protein, humanXRCC4 protein, human

Identifiers

PMID22529269
PMCPMC3348108
OpenAlexW2153172596

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.