ArticleDatabase : the journal of biological databases and curation2012
Using ODIN for a PharmGKB revalidation experiment.
Article in Database : the journal of biological databases and curation, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
14 citing papers in PubMed.
- Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis.Database : the journal of biological databases and curation · 2017Article
- Strategies towards digital and semi-automated curation in RegulonDB.Database : the journal of biological databases and curation · 2017Article
- Biocuration with insufficient resources and fixed timelines.Database : the journal of biological databases and curation · 2015Article
- Knowledge-based extraction of adverse drug events from biomedical text.BMC bioinformatics · 2014Article
- OntoGene web services for biomedical text mining.BMC bioinformatics · 2014Article
- Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12.Database : the journal of biological databases and curation · 2014Article
- PubTator: a web-based text mining tool for assisting biocuration.Nucleic acids research · 2013Article
- Article
- An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.Database : the journal of biological databases and curation · 2013Article
- Using the OntoGene pipeline for the triage task of BioCreative 2012.Database : the journal of biological databases and curation · 2013Article
- Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts.Database : the journal of biological databases and curation · 2013Article
- BioC: a minimalist approach to interoperability for biomedical text processing.Database : the journal of biological databases and curation · 2013Article
- Ranking relations between diseases, drugs and genes for a curation task.Journal of biomedical semantics · 2012Article
- Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference.Database : the journal of biological databases and curation · 2012Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
10 authors.
Funding
Abstract
The need for efficient text-mining tools that support curation of the biomedical literature is ever increasing. In this article, we describe an experiment aimed at verifying whether a text-mining tool capable of extracting meaningful relationships among domain entities can be successfully integrated into the curation workflow of a major biological database. We evaluate in particular (i) the usability of the system's interface, as perceived by users, and (ii) the correlation of the ranking of interactions, as provided by the text-mining system, with the choices of the curators.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.