Evidence map›Paper›PMID 22528324›Full record

ArticleJournal of gastrointestinal cancer2012

Genetic variations in stem cell-related genes and colorectal cancer prognosis.

Hushan Yang, Falin Qu, Ronald E Myers, Guoqiang Bao, Terry Hyslop, Guang Hu, Fei Fei, Jinliang Xing

Abstract read
In one paragraph

Article in Journal of gastrointestinal cancer, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Prostate cancer biomarker: a key field to explore.Asian journal of andrology · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Hushan YangDivision of Population Science, Department of Medical Oncology, Kimmel Cancer Center, Thomas Jefferson University, 1025 Walnut Street, Room 1015, Philadelphia, PA 19107, USA. hushan.yang@jefferson.edu
Falin Qu
Ronald E Myers
Guoqiang Bao
Terry Hyslop
Guang Hu
Fei Fei
Jinliang Xing
Air Force Medical University · CNSidney Kimmel Cancer Center · USNational Institutes of Health · USThomas Jefferson University · US

Funding

Tumor microRNA signatures as prognostic biomarkers of colorectal cancerR03CA162201 · NCI · THOMAS JEFFERSON UNIVERSITY · PI YANG, HUSHAN · 2012 to 2013
$150k
NCI NIH HHS R03 CA162201
6 · The paper itself

Abstract

backgroundMany properties of cancer cells are reminiscent of those in normal stem cells. Genes important to stem cell development have been significantly implicated in the etiology and clinical outcome of colorectal cancer (CRC). However, the associations of genetic variations in these genes with CRC prognosis have not yet been elucidated.

methodsWe analyzed the effects of eight potentially functional single nucleotide polymorphisms (SNPs) in six stem cell-related genes on the prognosis of a well-characterized population of 380 Chinese CRC patients diagnosed from February 2006 to January 2010.

resultsThe most significant finding was related to rs879882, a variant in the 5' region of POU5F1 gene which encodes a protein essential for embryonic stem cell self-renewal and pluripotency, and induced pluripotent stem cell reprogramming. The variant-containing genotypes of rs879882 were associated with an increased risk of recurrence (hazard ratio [HR] = 2.10, 95% confidence interval [CI] 1.17-3.76, P = 0.01). In chemotherapy-stratified analysis, the association remained borderline significant in patients receiving chemotherapy (HR = 1.97, 95% CI 0.89-4.34, P = 0.09). In addition, a nonsynonymous SNP of APC gene was also significantly associated with recurrence risk in chemotherapy-treated patients (HR = 2.63, 95% CI 1.14-6.06 P = 0.02). Further analyses showed a combined effect of the two SNPs in predicting CRC recurrence in patients receiving chemotherapy (P = 0.04) but not in those without chemotherapy (P = 0.43). Moreover, an exploratory multivariate assessment model indicated that these two variants enhanced the power to predict recurrence after chemotherapy.

conclusionWe presented one of the first epidemiologic studies showing that stem cell-related genetic variants may impact CRC clinical outcomes, especially in chemotherapy-treated patients.

Indexed as

Antineoplastic AgentsArea Under CurveAsian PeopleCohort StudiesColorectal NeoplasmsCytoskeletal ProteinsFemaleGenotypeHumansKaplan-Meier EstimateLongitudinal StudiesMaleMiddle AgedNeoplasm Recurrence, LocalNerve Tissue ProteinsOctamer Transcription Factor-3activity regulated cytoskeletal-associated proteinAntineoplastic AgentsCytoskeletal ProteinsNerve Tissue ProteinsOctamer Transcription Factor-3POU5F1 protein, human

Identifiers

PMID22528324
PMCPMC3721524
OpenAlexW1980113115

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.