Evidence map›Paper›PMID 22527514›Full record

ArticleJournal of structural and functional genomics2012

The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource.

Lida K Gifford, Lester G Carter, Margaret J Gabanyi, Helen M Berman, Paul D Adams

Abstract read
In one paragraph

Article in Journal of structural and functional genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. BioMagResBank (BMRB) as a Resource for Structural Biology.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  2. Article
  3. Anticipating innovations in structural biology.Quarterly reviews of biophysics · 2018
    Review
  4. The impact of structural genomics: the first quindecennial.Journal of structural and functional genomics · 2016
    Review
  5. Article
  6. Annotation of proteins of unknown function: initial enzyme results.Journal of structural and functional genomics · 2015
    Article
  7. Protein structure annotation resources.Methods in molecular biology (Clifton, N.J.) · 2015
    Review
  8. Review
  9. Article
  10. Article
  11. Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  12. Article
  13. Article
  14. Article
  15. The EBI enzyme portal.Nucleic acids research · 2013
    Article
  16. Structural genomics and the Protein Data Bank.The Journal of biological chemistry
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Lida K GiffordPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Lester G Carter
Margaret J Gabanyi
Helen M Berman
Paul D Adams

Funding

The Protein Structure Inittiative KnowledgebaseU01GM093324 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI BERMAN, HELEN M · 2010 to 2015
$12.9M
NIGMS NIH HHS U01 GM093324NIGMS NIH HHS U01GM093324
6 · The paper itself

Abstract

The Technology Portal of the Protein Structure Initiative Structural Biology Knowledgebase (PSI SBKB; http://technology.sbkb.org/portal/ ) is a web resource providing information about methods and tools that can be used to relieve bottlenecks in many areas of protein production and structural biology research. Several useful features are available on the web site, including multiple ways to search the database of over 250 technological advances, a link to videos of methods on YouTube, and access to a technology forum where scientists can connect, ask questions, get news, and develop collaborations. The Technology Portal is a component of the PSI SBKB ( http://sbkb.org ), which presents integrated genomic, structural, and functional information for all protein sequence targets selected by the Protein Structure Initiative. Created in collaboration with the Nature Publishing Group, the SBKB offers an array of resources for structural biologists, such as a research library, editorials about new research advances, a featured biological system each month, and a functional sleuth for searching protein structures of unknown function. An overview of the various features and examples of user searches highlight the information, tools, and avenues for scientific interaction available through the Technology Portal.

Indexed as

Databases, ProteinInternetOnline SystemsProtein ConformationUser-Computer InterfaceComputational BiologyDatabase Management SystemsHumansKnowledge BasesProteinsSocial NetworkingProteins

Identifiers

PMID22527514
PMCPMC3588887

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.